Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 136 9e-27
seq3082 132 1e-25
seq3063 104 5e-17
seq3061 102 2e-16
seq3105 95.1 3e-14
seq3135 93.3 1e-13
seq2997 87.8 4e-12
>seq2965
Length=1497097
Score = 136 bits (150), Expect = 9e-27
Identities = 160/215 (74%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || ||||| || ||||||||||| |||| | || | ||| |||
Sbjct 1204097 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCT 1204038
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| |||||||||||||| | | ||| || ||||| |||
Sbjct 1204037 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 1203978
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || |||||| |||| | | |||| ||| |||||| || || || ||
Sbjct 1203977 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACCTCGAGGGTGATG 1203921
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| ||||| ||||||||||||| ||||||
Sbjct 1203920 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1203886
Score = 129 bits (142), Expect = 1e-24
Identities = 159/216 (74%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || ||||| || ||||||||||| || | | || | ||| |||
Sbjct 1203869 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCT 1203810
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| |||||||||||||| | | ||| || ||||| |||
Sbjct 1203809 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 1203750
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || |||||| |||| | | |||| ||| |||||| || || || ||
Sbjct 1203749 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACCTCGAGGGTGATG 1203693
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| ||||| ||||| ||||| ||||||| |||||||
Sbjct 1203692 GTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCATT 1203657
>seq3082
Length=10725151
Score = 132 bits (146), Expect = 1e-25
Identities = 165/225 (73%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| || | |||||| || || |||||||||||||| ||||||||||| || | | |||
Sbjct 1251686 CCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 1251627
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || || || || ||||| |||||||||||||| | | || ||
Sbjct 1251626 GCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCC 1251567
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059
||| || || || || || || ||| |||| | | |||| ||| ||| |||||
Sbjct 1251566 TTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACTTC 1251510
Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || ||||| || || ||||||||||||| ||||||
Sbjct 1251509 CAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || || || ||||| |||||||| ||||||||||| || | | ||| | ||||||
Sbjct 1251448 AGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1251389
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || |||||||||||||||||||| | | || ||||| || ||
Sbjct 1251388 TCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 1251329
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || ||| |||| | | |||| ||| || || ||||| || ||
Sbjct 1251328 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTC 1251269
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || |||||||||||||||| ||||||
Sbjct 1251268 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237
Score = 111 bits (122), Expect = 4e-19
Identities = 157/217 (72%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || || || ||||| |||||||| ||||||||||| || | | ||| | ||||||
Sbjct 1251220 AGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1251161
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| |||||||||||||| | | || |||||||| ||
Sbjct 1251160 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCC 1251101
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAG 152070
|| || || || ||| |||| | | ||| ||| ||| | || |||| || || |
Sbjct 1251100 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTC-CACCTCCAAG-GTGATGG 1251043
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
| ||||| || || || |||||||||| ||||||||
Sbjct 1251042 TCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1251006
>seq3063
Length=7952490
Score = 104 bits (114), Expect = 5e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
|||||| | |||||||| ||||| ||||| |||| ||||||||||| | ||||| |
Sbjct 5877721 GAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCA 5877662
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|||||||| || || || | ||||| ||||| ||||| || | | ||||||||
Sbjct 5877661 TCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTC 5877602
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| ||||| || || || ||| | |||| ||| || ||| || | || ||
Sbjct 5877601 CTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGT 5877542
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || | ||||| || || || ||||| | |||||| ||
Sbjct 5877541 GATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCATCTT 5877500
>seq3061
Length=7642621
Score = 102 bits (112), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 5/219 (2%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
|| ||| || |||||||||||||| | ||| ||||| ||||||||||| | ||||| |
Sbjct 2174636 GAATCTCAGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCA 2174577
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|||||||| || || || || ||||| ||||| || || || | | ||||||||
Sbjct 2174576 TCCATCTTCCAG----TTACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTC 2174521
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || || ||| | ||||| |||||||| || | | || ||
Sbjct 2174520 CTTATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGT 2174461
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || || || || | ||| | ||||||
Sbjct 2174460 GATGGTCTTTCCTGTAAGGGT-TTTATGAAAATCTGCAT 2174423
>seq3105
Length=21505965
Score = 95.1 bits (104), Expect = 3e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
|||||| | |||||||||||||| ||||| ||||| ||||||||||| | ||||| |
Sbjct 7417344 GAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACG 7417403
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|||||||| || | | | || ||||| ||||| ||||| || | | ||||||||
Sbjct 7417404 TCCATCTTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTC 7417463
Query 152006 CTTTTCTTGAATTTT 152020
||| || || || ||
Sbjct 7417464 CTTATCCTGGATCTT 7417478
>seq3135
Length=60673567
Score = 93.3 bits (102), Expect = 1e-13
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 151911 GACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCG 151970
|||||||| || |||||||| || | | ||| | || || || || ||| |||||
Sbjct 60530416 GACTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGCA 60530357
Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030
|| | || | ||||||| | | ||| |||||||| ||||| ||||| |||||||
Sbjct 60530356 AATACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTGACA 60530297
Query 152031 GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090
|||| | |||| ||| || ||||| || || || |||||| | || ||||||
Sbjct 60530296 TTCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGTCTTC 60530237
Query 152091 ACGAAGACCTGCAT 152104
||||| | ||||||
Sbjct 60530236 ACGAATATCTGCAT 60530223
>seq2997
Length=2481227
Score = 87.8 bits (96), Expect = 4e-12
Identities = 118/163 (72%), Gaps = 1/163 (1%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTC- 151944
|||||| | |||||||||||||| |||| ||||| ||||||||| | | ||||| |
Sbjct 411704 GAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACA 411645
Query 151945 TCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004
||| |||||| || || || || ||||| |||| ||||| || | | |||||||
Sbjct 411644 TCCAATCTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTT 411585
Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGA 152047
|||| || || || || || ||| | ||||| |||| ||
Sbjct 411584 CCTTATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGA 411542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153774321213624
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