Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 149 1e-30
seq2965 141 2e-28
seq3126 132 1e-25
seq3063 123 5e-23
seq3135 105 1e-17
seq3134 98.7 2e-15
seq3087 89.7 1e-12
seq3035 89.7 1e-12
seq3071 86.0 1e-11
>seq3082
Length=10725151
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| | |||||| || ||||| || | ||| ||||| |||||||||||||||| |
Sbjct 1251463 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1251404
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| ||||| || || || || || |||||||| | | || |||||| |||
Sbjct 1251403 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGA 1251344
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || || || || |||||||| || || || | || || ||||| | || ||
Sbjct 1251343 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1251284
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||| ||||| || |||| |||||| ||||| ||||||||
Sbjct 1251283 TCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237
Score = 140 bits (154), Expect = 7e-28
Identities = 176/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| | |||||| || ||||| || | ||| ||||| |||||||||||||||| |
Sbjct 1251235 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1251176
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| ||||| || || || || || |||||||| | | || |||||| |||
Sbjct 1251175 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGA 1251116
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || ||||| || |||||||| || || || | || || ||||| | || ||
Sbjct 1251115 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1251056
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACAAA 283112
|| | ||||| ||||| || |||| || || ||||| || |||||||| | |||||
Sbjct 1251055 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTTGACCTACAAT 1250996
Query 283113 TA 283114
||
Sbjct 1250995 TA 1250994
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| | ||| || || ||||| || | || ||||| |||||||||||||||| |
Sbjct 1251691 CCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAA 1251632
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| ||||| || || || || || |||||||| | | || |||||| |||
Sbjct 1251631 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 1251572
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || || || || |||||||| || || || | || || ||||| | || |||
Sbjct 1251571 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACT 1251512
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || |||| ||||| ||||| ||||||||
Sbjct 1251511 TCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 7252627 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 7252569
>seq2965
Length=1497097
Score = 141 bits (156), Expect = 2e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| | |||||| || ||||| || | ||| || || ||||||||||||||||
Sbjct 1203884 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1203825
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| || || || || || || || || ||||||| | || |||||| ||
Sbjct 1203824 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203765
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||||||||| || || || | || || ||||| | || ||
Sbjct 1203764 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACC 1203705
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103
||||| ||||| ||||| || || | ||||| ||||| ||||||||| ||
Sbjct 1203704 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCATTGTC 1203654
Score = 132 bits (146), Expect = 1e-25
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || | |||||| || ||||| || | ||| || || |||||||||||||| |
Sbjct 1204113 ACCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1204054
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| || || || || || || || || ||||||| | || |||||| ||
Sbjct 1204053 GAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 1203994
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||||||||||||||| || || || | || || ||||| | || ||
Sbjct 1203993 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 1203934
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 1203933 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1203886
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1193390 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1193448
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1195846 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1195904
>seq3126
Length=40167016
Score = 132 bits (146), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 7/227 (3%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| ||||||| |||||||| |||| ||| |||||||||||||||||||| |
Sbjct 36688760 CCACCTCGCAGGCACAGTACCAGGTGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAG 36688819
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || | |||||||| || ||||| | ||| || |||| | || || ||| ||
Sbjct 36688820 AGAGTCCAACCATCCTCCAGCTGTTTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGG 36688879
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| | ||||||||||||||| || | ||| || | ||||| | |||||
Sbjct 36688880 ATGCTCTCCTTGTCTTGGATTTTGGTTTTGAC-------TTGGTGTCACTGGGCTCGACC 36688932
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| || | ||||||||||||| ||||| ||||| ||||||||
Sbjct 36688933 TCGAGGATGGTGGTCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 36688979
>seq3063
Length=7952490
Score = 123 bits (136), Expect = 5e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || | | || ||||| | ||| || |||| |||||||| ||||
Sbjct 5877730 ACCACCACGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGA 5877671
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| |||| ||||| || ||||| || || ||||||||| | ||| || ||| ||
Sbjct 5877670 CAAAGTGCATCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGG 5877611
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || ||||| ||||||||||| || ||||| | || ||||||| || | || ||
Sbjct 5877610 AATTCCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAAC 5877551
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
| ||| ||||| ||| | ||||| | || || ||||| |||||||| ||
Sbjct 5877550 CTGGAGGGTGATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCATCTT 5877500
>seq3135
Length=60673567
Score = 105 bits (116), Expect = 1e-17
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
||||| || ||||||||||| | || || || || ||||| || ||||| ||||||||
Sbjct 60530413 TCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGCAAAT 60530354
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
| || | | ||||| || || || |||||||||||||| || ||||| || |
Sbjct 60530353 ACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTGACATTC 60530294
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|| | ||||| | || || || || ||||| ||||| ||| | | ||||| |||
Sbjct 60530293 TCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGTCTTCACG 60530234
Query 283089 AATATCTGCAT 283099
|||||||||||
Sbjct 60530233 AATATCTGCAT 60530223
>seq3134
Length=59225736
Score = 98.7 bits (108), Expect = 2e-15
Identities = 68/76 (89%), Gaps = 2/76 (3%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGAT 168812
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 3670162 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA- 3670104
Query 168813 TCGTCGCGATAGTGTA 168828
|| | | |||||||
Sbjct 3670103 -CGGGGAGGTAGTGTA 3670089
Score = 91.5 bits (100), Expect = 3e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 282875 ACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAG 282934
||| | |||| | || ||||| | | ||| |||||||||||| ||||||||| ||
Sbjct 48385288 ACCTCACAGGTGGAGCACCAGGCGCAGGGTGAACTCTTTTTGGATGCTGTAGTCAGAGAG 48385347
Query 282935 CGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAAT 282994
|| | |||||||| || ||| | | |||||| |||| || || |||||| || ||
Sbjct 48385348 AGTCTGACCATCCTCCAGCTGTCTGCTGGCAAACATCAGACACTGCTGGTCAGATGGGAT 48385407
Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTT 283022
||||| ||||||||||| ||| ||||
Sbjct 48385408 GCCCTCTTTGTCTTGGATTTTTTTTTTT 48385435
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 5778632 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 5778574
>seq3087
Length=11989055
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 11171536 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 11171478
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 11181792 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 11181734
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 11216331 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 11216389
>seq3035
Length=4563218
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1788386 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1788328
>seq3071
Length=8717935
Score = 86.0 bits (94), Expect = 1e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054
||| |||||||||||||| || ||||| || | ||||| ||||| | || || ||
Sbjct 8139942 ACCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCTGGGCTCAACCTC 8139883
Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101
|| ||||| ||||| || |||| ||||| ||||||||||||||||
Sbjct 8139882 AAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAATATCTGCATTT 8139836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046697034728176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |