Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq3131 150 3e-31
seq3116 134 2e-26
>seq3131
Length=50742376
Score = 150 bits (166), Expect = 3e-31
Identities = 203/283 (72%), Gaps = 0/283 (0%)
Strand=Plus/Minus
Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362
||||| ||||| ||||| | |||| |||||||| || | || | |||||||||
Sbjct 34218937 GGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATGGAGGCAGTGTTGACGATCTGA 34218878
Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422
|| ||||| ||||| || || || || ||||||||||| || ||||| || |||
Sbjct 34218877 AAACCCACTTCTCCTCCAAAAGTACTCGGCTTCCAGTAGTGAGGTGAGCATATAGGGTTA 34218818
Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482
|||| || ||||| | |||||| || || |||| ||| | ||| |||| ||||| ||
Sbjct 34218817 CCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATCTCCACCATGGTCTCCCCGAAAATA 34218758
Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542
|||| || || || |||||||| | | ||| |||||||||| || || | |||
Sbjct 34218757 GCGTCTGGCCGAGGTTTTTCCACGAGAAGGGCGGGATACAGCTCCATCGCATCAATGTCA 34218698
Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
||||| ||||| | ||| ||||| || ||||| || ||||
Sbjct 34218697 CCGTAGAGGGCTTCCAATTCTGCAGCCATTTCCTTCTCACCTG 34218655
Score = 145 bits (160), Expect = 1e-29
Identities = 172/231 (74%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
||||||||||| | || ||| ||| |||||||| || ||||| || |||||||||||
Sbjct 34217324 GTCTGGAACAGGCGTTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCACACT 34217265
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||| || |||| |||||||| |||||||||||||| || || || ||||| || ||
Sbjct 34217264 CTGTTATGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGGCCTGGCACCAGACCGAAG 34217205
Query 9376 GCCTCTTGACCGACAGCCAGAC--GCATGTTTTCGGGCACTTCGGGAGGATAGATCATGT 9433
|||| || || ||||| | | ||||| ||||| | | ||| || || ||||| |
Sbjct 34217204 ACCTCCTGGCCCACAGCAAAGCGTGCATG--CTCGGGGATGTAGGGTGGGTACATCATCT 34217147
Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
|| || |||||||| | ||| || ||||| || || ||||| ||||
Sbjct 34217146 CTACTTGAGTTTCTTTGACAGTGGGAGGGTACATCTCTCCATCAATTATCT 34217096
Score = 105 bits (116), Expect = 1e-17
Identities = 188/267 (70%), Gaps = 8/267 (3%)
Strand=Plus/Minus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| | ||| || ||||| || ||||| ||||| || | |||||||| || ||
Sbjct 34217855 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCT 34217796
Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTT-AACGTAGTCATACTTTGTTTTATCAATC 9060
| | ||| || |||||||||| || ||| || || | | |||| || ||||||
Sbjct 34217795 ACTAATATAGAGTTGTTGTAGAGAAACTGTTGAAAGTTATAA-ACTTGGTC--ATCAATT 34217739
Query 9061 TCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9120
| ||| | || |||| || | |||||||||||||| | |||||||||||||| ||
Sbjct 34217738 TGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATACAGCGTGTTAAACTCGGAAGCAATG 34217679
Query 9121 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAA 9179
|| || ||||||||||| | | ||| ||||| || || | |||| ||| | ||
Sbjct 34217678 CGGTTCTGGTACTGGAATTGCTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAA 34217620
Query 9180 ATGGTAGCCGCTGAGCTGCTGAACGTA 9206
||| || ||||| | ||||| || ||
Sbjct 34217619 ATGATACCCGCTCAAATGCTGTACATA 34217593
Score = 91.5 bits (100), Expect = 2e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709
||||||||||| ||||||| | ||||| || || || || ||| | | | |||
Sbjct 34215933 CTTACCCCATGGGCCAGTCCCGTGGTGAAAGCTGGTCCCCGTTTTTGATCTGACTTGAAA 34215874
Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769
||||| || || ||||| ||| |||| || || ||||| | || ||||| ||||||||
Sbjct 34215873 AACTGATGAGTAAAATGCTGGGCAAAGAAAGCGAACATCATATTTGTGCCTTGGGGATCA 34215814
Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807
|| |||| |||| | |||||| |||||||| |||
Sbjct 34215813 GGGATGAACTTCCTTCTTAGAAGAACTTTTTCCAGAAC 34215776
>seq3116
Length=27942054
Score = 134 bits (148), Expect = 2e-26
Identities = 212/304 (70%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 8281 GGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAAT 8340
||| || ||||| | | | | ||||| |||| |||| |||||||| || |
Sbjct 11714658 GGGCACGCGGAAAGAGACGTAGGGACAGGTCTTGGTGTTGAGGCAGACTAGCTTCTTCAG 11714717
Query 8341 AGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTA 8400
|| || | ||||||| ||| ||||| || || || || ||||| |||||||||||
Sbjct 11714718 TGTGGCCGTGTTGACGAGGTTGAAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAGTA 11714777
Query 8401 CCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTC 8460
| ||||||||||||| || ||| ||| || |||||||| || |||||||| | |||
Sbjct 11714778 CTGCGGGGAGCAGATGGGATTTCCCAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATCTC 11714837
Query 8461 GAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTA 8520
|| || ||||| || ||||||| ||| || || ||||| | | ||||| | |||
Sbjct 11714838 GATCATACTCTCCCCAAAGATGGAGTTCGGTAGGCATTTTTCAAGGAGCAATCCTGGGTA 11714897
Query 8521 CAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTC 8580
| ||| | ||| |||| |||||| || | || | || || || |||||||| ||
Sbjct 11714898 GAACTCTAAAGCATCGATGTCTCCATATAACTCCTCCAACTCAGCTGCCATCTCCTTGTC 11714957
Query 8581 TCCT 8584
|||
Sbjct 11714958 CCCT 11714961
Score = 96.9 bits (106), Expect = 5e-15
Identities = 119/163 (73%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || || | |||||| || ||||||||||| || || || ||| ||| |||||
Sbjct 11721527 TCACCTATGAGGATGAGGCGGGTGGTCTGGAAGAGCTGTTCATCATCCCAGGTGGGATGC 11721586
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
||| ||||| | || ||||| | |||||| || | ||||||| ||||| |||| |
Sbjct 11721587 TCTGCCTTCAGCAGGTCACACACACGGTTGTGCTCACGCAGCCAGAGCGTGGCATACAGC 11721646
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
|||||||| || | ||| ||||| | ||||| || || ||||
Sbjct 11721647 ATGAGCCCCGGCAGCAGCCCAAACACTTCTTGGCCCACGGCCA 11721689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716848626741760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |