Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq3131 150 3e-31 seq3116 134 2e-26 >seq3131 Length=50742376 Score = 150 bits (166), Expect = 3e-31 Identities = 203/283 (72%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||| ||||| ||||| | |||| |||||||| || | || | ||||||||| Sbjct 34218937 GGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATGGAGGCAGTGTTGACGATCTGA 34218878 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| ||||| || || || || ||||||||||| || ||||| || ||| Sbjct 34218877 AAACCCACTTCTCCTCCAAAAGTACTCGGCTTCCAGTAGTGAGGTGAGCATATAGGGTTA 34218818 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || ||||| | |||||| || || |||| ||| | ||| |||| ||||| || Sbjct 34218817 CCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATCTCCACCATGGTCTCCCCGAAAATA 34218758 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 |||| || || || |||||||| | | ||| |||||||||| || || | ||| Sbjct 34218757 GCGTCTGGCCGAGGTTTTTCCACGAGAAGGGCGGGATACAGCTCCATCGCATCAATGTCA 34218698 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||||| ||||| | ||| ||||| || ||||| || |||| Sbjct 34218697 CCGTAGAGGGCTTCCAATTCTGCAGCCATTTCCTTCTCACCTG 34218655 Score = 145 bits (160), Expect = 1e-29 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||||||||| | || ||| ||| |||||||| || ||||| || ||||||||||| Sbjct 34217324 GTCTGGAACAGGCGTTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCACACT 34217265 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| || |||| |||||||| |||||||||||||| || || || ||||| || || Sbjct 34217264 CTGTTATGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGGCCTGGCACCAGACCGAAG 34217205 Query 9376 GCCTCTTGACCGACAGCCAGAC--GCATGTTTTCGGGCACTTCGGGAGGATAGATCATGT 9433 |||| || || ||||| | | ||||| ||||| | | ||| || || ||||| | Sbjct 34217204 ACCTCCTGGCCCACAGCAAAGCGTGCATG--CTCGGGGATGTAGGGTGGGTACATCATCT 34217147 Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 || || |||||||| | ||| || ||||| || || ||||| |||| Sbjct 34217146 CTACTTGAGTTTCTTTGACAGTGGGAGGGTACATCTCTCCATCAATTATCT 34217096 Score = 105 bits (116), Expect = 1e-17 Identities = 188/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| || ||||| ||||| || | |||||||| || || Sbjct 34217855 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCT 34217796 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTT-AACGTAGTCATACTTTGTTTTATCAATC 9060 | | ||| || |||||||||| || ||| || || | | |||| || |||||| Sbjct 34217795 ACTAATATAGAGTTGTTGTAGAGAAACTGTTGAAAGTTATAA-ACTTGGTC--ATCAATT 34217739 Query 9061 TCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9120 | ||| | || |||| || | |||||||||||||| | |||||||||||||| || Sbjct 34217738 TGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATACAGCGTGTTAAACTCGGAAGCAATG 34217679 Query 9121 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAA 9179 || || ||||||||||| | | ||| ||||| || || | |||| ||| | || Sbjct 34217678 CGGTTCTGGTACTGGAATTGCTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAA 34217620 Query 9180 ATGGTAGCCGCTGAGCTGCTGAACGTA 9206 ||| || ||||| | ||||| || || Sbjct 34217619 ATGATACCCGCTCAAATGCTGTACATA 34217593 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| ||||||| | ||||| || || || || ||| | | | ||| Sbjct 34215933 CTTACCCCATGGGCCAGTCCCGTGGTGAAAGCTGGTCCCCGTTTTTGATCTGACTTGAAA 34215874 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||| || || ||||| ||| |||| || || ||||| | || ||||| |||||||| Sbjct 34215873 AACTGATGAGTAAAATGCTGGGCAAAGAAAGCGAACATCATATTTGTGCCTTGGGGATCA 34215814 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 || |||| |||| | |||||| |||||||| ||| Sbjct 34215813 GGGATGAACTTCCTTCTTAGAAGAACTTTTTCCAGAAC 34215776 >seq3116 Length=27942054 Score = 134 bits (148), Expect = 2e-26 Identities = 212/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8281 GGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAAT 8340 ||| || ||||| | | | | ||||| |||| |||| |||||||| || | Sbjct 11714658 GGGCACGCGGAAAGAGACGTAGGGACAGGTCTTGGTGTTGAGGCAGACTAGCTTCTTCAG 11714717 Query 8341 AGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTA 8400 || || | ||||||| ||| ||||| || || || || ||||| ||||||||||| Sbjct 11714718 TGTGGCCGTGTTGACGAGGTTGAAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAGTA 11714777 Query 8401 CCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTC 8460 | ||||||||||||| || ||| ||| || |||||||| || |||||||| | ||| Sbjct 11714778 CTGCGGGGAGCAGATGGGATTTCCCAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATCTC 11714837 Query 8461 GAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTA 8520 || || ||||| || ||||||| ||| || || ||||| | | ||||| | ||| Sbjct 11714838 GATCATACTCTCCCCAAAGATGGAGTTCGGTAGGCATTTTTCAAGGAGCAATCCTGGGTA 11714897 Query 8521 CAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTC 8580 | ||| | ||| |||| |||||| || | || | || || || |||||||| || Sbjct 11714898 GAACTCTAAAGCATCGATGTCTCCATATAACTCCTCCAACTCAGCTGCCATCTCCTTGTC 11714957 Query 8581 TCCT 8584 ||| Sbjct 11714958 CCCT 11714961 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||| || || || ||| ||| ||||| Sbjct 11721527 TCACCTATGAGGATGAGGCGGGTGGTCTGGAAGAGCTGTTCATCATCCCAGGTGGGATGC 11721586 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| | || ||||| | |||||| || | ||||||| ||||| |||| | Sbjct 11721587 TCTGCCTTCAGCAGGTCACACACACGGTTGTGCTCACGCAGCCAGAGCGTGGCATACAGC 11721646 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 |||||||| || | ||| ||||| | ||||| || || |||| Sbjct 11721647 ATGAGCCCCGGCAGCAGCCCAAACACTTCTTGGCCCACGGCCA 11721689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716848626741760