Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq3113 141 1e-28 >seq3113 Length=25888900 Score = 141 bits (156), Expect = 1e-28 Identities = 465/723 (64%), Gaps = 16/723 (2%) Strand=Plus/Minus Query 155739 GCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAATTTTTAGTT 155798 || || || || || || || |||| || |||| |||||| || ||| |||| || || Sbjct 13630036 GCAGTGGACTGTGCTGCTCGCACCAGACCCTCCAGTTCAGCACCACTGAAATTCTTGGTC 13629977 Query 155799 TCAACGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGATTTCATTTTA 155858 || || || | || || | ||||| || | || | | | || | |||| | Sbjct 13629976 TCCACAGCCAGTTCTTTAATATCTACATCAGTAGAGAGCAATTGATGGTCTCTCATCCTT 13629917 Query 155859 GCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATC 155918 || ||| | | | || || || || || || ||||| || || || || || || Sbjct 13629916 GCTGTGTGGATGTGAAGGATCTGTAGTCGACCTTTCTCATCTGGCAAGCCTATCTCCATT 13629857 Query 155919 TTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTC 155978 || | ||||| | |||||| | | || || ||||| | || ||||| |||||| Sbjct 13629856 TTGACTTCCAGTCTTCCAGGTTGAAGGAGAGCCTCATCAATCAGATCTGGTCTATTGGTC 13629797 Query 155979 ATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGA 156038 || || |||| | |||||||| | ||||| || || ||||| ||||| || ||| Sbjct 13629796 ATTCCAATGACAAGGATGTTGTTCAGCTGCTCTACCCCATCAATTTTGGACAACAACTGA 13629737 Query 156039 TTGACTACGGCGTCGTGCGTGGC---GTTATCA---------CCGCGTTTTTTACACAGA 156086 ||||| || | || ||| | | | || || || | | ||| || | Sbjct 13629736 TTGACAACAGTGTTGTGAATCCCAGTGCTACCAGCCATGCTCCCTCTCTGTTTGCAGATG 13629677 Query 156087 GCATCTATTTCATCGAAGACGATAACGTGTAATCCGCTGGCTAAACCCAATTTNNNNNNN 156146 ||||| |||||||| |||| ||| | ||| || || || ||| | | Sbjct 13629676 GCATCAATTTCATCAAAGATGATGATGTGCAAACCAGTGTTAGCACCAAGCCTCCTTTGC 13629617 Query 156147 NNNNNNNNAGCCTCTTGAAACAATCGTCTGAC-GTTAGCTTCCGATTCACCCACATATTT 156205 ||| || ||| | | | ||| |||||| || ||||||||||||||||| Sbjct 13629616 TCCTCTTCAGCATCAGCAAAAAGTT-TGTGAATGTTAGCCTCTGATTCACCCACATATTT 13629558 Query 156206 GTTTAATAATTCAGGACCGTTAACTATTTTGACGGGTCGTG-ATTTAAAAGCTTGAGCGA 156264 ||| | ||| || || || || | |||| || || ||| || | |||| | | Sbjct 13629557 GTTAAGATTTTCTGGTCCATTGACCACTTTGGGCTCTCTTGCATTCAACATCTTGC-CAA 13629499 Query 156265 TACAGCGAGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTA 156324 | |||||| | || ||||| || || || || || ||||||| | ||||| | Sbjct 13629498 TCTGTAGAGCCAAGAGAGTCTTACCACATCCTGGGGGCCCATATAACAGGATGCCTTTAA 13629439 Query 156325 TATGTTTACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTC 156384 |||||||||||| | | ||| || ||| |||| | || |||||||||||||| Sbjct 13629438 CATGTTTACAACCCATCTGTTCCACAATCTCTGGAGGAAATACTCGGGAAGCAAATGCTC 13629379 Query 156385 TTCGAAAAATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCC 156444 ||||||||| ||||||||||| |||| || || | ||||||| ||||| |||| Sbjct 13629378 GTCGAAAAATATCTGAAAATTCTTTGTCCAGACCTCCTATTCCCATTTTTTCAAAGTTCC 13629319 Query 156445 AAT 156447 ||| Sbjct 13629318 AAT 13629316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667048983944640