Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_033423.1
Length=208501
Score E
Sequences producing significant alignments: (Bits) Value
seq3113 141 1e-28
>seq3113
Length=25888900
Score = 141 bits (156), Expect = 1e-28
Identities = 465/723 (64%), Gaps = 16/723 (2%)
Strand=Plus/Minus
Query 155739 GCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAATTTTTAGTT 155798
|| || || || || || || |||| || |||| |||||| || ||| |||| || ||
Sbjct 13630036 GCAGTGGACTGTGCTGCTCGCACCAGACCCTCCAGTTCAGCACCACTGAAATTCTTGGTC 13629977
Query 155799 TCAACGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGATTTCATTTTA 155858
|| || || | || || | ||||| || | || | | | || | |||| |
Sbjct 13629976 TCCACAGCCAGTTCTTTAATATCTACATCAGTAGAGAGCAATTGATGGTCTCTCATCCTT 13629917
Query 155859 GCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATC 155918
|| ||| | | | || || || || || || ||||| || || || || || ||
Sbjct 13629916 GCTGTGTGGATGTGAAGGATCTGTAGTCGACCTTTCTCATCTGGCAAGCCTATCTCCATT 13629857
Query 155919 TTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTC 155978
|| | ||||| | |||||| | | || || ||||| | || ||||| ||||||
Sbjct 13629856 TTGACTTCCAGTCTTCCAGGTTGAAGGAGAGCCTCATCAATCAGATCTGGTCTATTGGTC 13629797
Query 155979 ATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGA 156038
|| || |||| | |||||||| | ||||| || || ||||| ||||| || |||
Sbjct 13629796 ATTCCAATGACAAGGATGTTGTTCAGCTGCTCTACCCCATCAATTTTGGACAACAACTGA 13629737
Query 156039 TTGACTACGGCGTCGTGCGTGGC---GTTATCA---------CCGCGTTTTTTACACAGA 156086
||||| || | || ||| | | | || || || | | ||| || |
Sbjct 13629736 TTGACAACAGTGTTGTGAATCCCAGTGCTACCAGCCATGCTCCCTCTCTGTTTGCAGATG 13629677
Query 156087 GCATCTATTTCATCGAAGACGATAACGTGTAATCCGCTGGCTAAACCCAATTTNNNNNNN 156146
||||| |||||||| |||| ||| | ||| || || || ||| | |
Sbjct 13629676 GCATCAATTTCATCAAAGATGATGATGTGCAAACCAGTGTTAGCACCAAGCCTCCTTTGC 13629617
Query 156147 NNNNNNNNAGCCTCTTGAAACAATCGTCTGAC-GTTAGCTTCCGATTCACCCACATATTT 156205
||| || ||| | | | ||| |||||| || |||||||||||||||||
Sbjct 13629616 TCCTCTTCAGCATCAGCAAAAAGTT-TGTGAATGTTAGCCTCTGATTCACCCACATATTT 13629558
Query 156206 GTTTAATAATTCAGGACCGTTAACTATTTTGACGGGTCGTG-ATTTAAAAGCTTGAGCGA 156264
||| | ||| || || || || | |||| || || ||| || | |||| | |
Sbjct 13629557 GTTAAGATTTTCTGGTCCATTGACCACTTTGGGCTCTCTTGCATTCAACATCTTGC-CAA 13629499
Query 156265 TACAGCGAGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTA 156324
| |||||| | || ||||| || || || || || ||||||| | ||||| |
Sbjct 13629498 TCTGTAGAGCCAAGAGAGTCTTACCACATCCTGGGGGCCCATATAACAGGATGCCTTTAA 13629439
Query 156325 TATGTTTACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTC 156384
|||||||||||| | | ||| || ||| |||| | || ||||||||||||||
Sbjct 13629438 CATGTTTACAACCCATCTGTTCCACAATCTCTGGAGGAAATACTCGGGAAGCAAATGCTC 13629379
Query 156385 TTCGAAAAATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCC 156444
||||||||| ||||||||||| |||| || || | ||||||| ||||| ||||
Sbjct 13629378 GTCGAAAAATATCTGAAAATTCTTTGTCCAGACCTCCTATTCCCATTTTTTCAAAGTTCC 13629319
Query 156445 AAT 156447
|||
Sbjct 13629318 AAT 13629316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 667048983944640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |