Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 147 5e-30
seq2965 136 1e-26
>seq3082
Length=10725151
Score = 147 bits (162), Expect = 5e-30
Identities = 175/235 (74%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| |||| ||||||||||| || || || || || |||||| | ||||
Sbjct 1251001 AGGTCAAAATGC---AAATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGG 1251057
Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
||| ||| || |||||||| ||||| || || ||||| ||||| || ||||| ||
Sbjct 1251058 TGG--AGCCCAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 1251115
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
|| || |||||||| | || ||||| || || || ||||| |||||||| | |||||
Sbjct 1251116 TCCACCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCT 1251175
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
| | || || ||| |||| ||||| || || ||||| || || || | || |||
Sbjct 1251176 TTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGA 1251230
>seq2965
Length=1497097
Score = 136 bits (150), Expect = 1e-26
Identities = 156/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || |||||||| || ||||| || || || |||||||||||||| | ||| || |
Sbjct 1203889 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGT--AGAGCCCAGTG 1203946
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| ||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 1203947 ACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 1204006
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || |||||||| || || ||||| ||||| || | || || |||| || |||
Sbjct 1204007 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAACA 1204066
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || ||||| || ||
Sbjct 1204067 TCCAGAAGGAGTCCACCCTGCACCTGGT 1204094
Score = 127 bits (140), Expect = 5e-24
Identities = 162/221 (73%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || ||||| || || ||||| || || || |||||||||||||| | ||| || |
Sbjct 1203661 CAGATCTTCGTAAAGACCCTCACTGGCAAGACCATCACCCTCGAGGT--AGAGCCCAGTG 1203718
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| ||||| ||||| || ||||| || || ||||| || |||||||
Sbjct 1203719 ACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 1203778
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || |||||||| || || ||||| ||||| || | || || | || || |||
Sbjct 1203779 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAACA 1203838
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || || | || |||
Sbjct 1203839 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGA 1203879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203682710697936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |