Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3082 147 5e-30 seq2965 136 1e-26 >seq3082 Length=10725151 Score = 147 bits (162), Expect = 5e-30 Identities = 175/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| ||||||||||| || || || || || |||||| | |||| Sbjct 1251001 AGGTCAAAATGC---AAATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGG 1251057 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| ||| || |||||||| ||||| || || ||||| ||||| || ||||| || Sbjct 1251058 TGG--AGCCCAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 1251115 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 1251116 TCCACCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCT 1251175 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | | || || ||| |||| ||||| || || ||||| || || || | || ||| Sbjct 1251176 TTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGA 1251230 >seq2965 Length=1497097 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || ||||| || || || |||||||||||||| | ||| || | Sbjct 1203889 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGT--AGAGCCCAGTG 1203946 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 1203947 ACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 1204006 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| ||||| || | || || |||| || ||| Sbjct 1204007 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAACA 1204066 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 1204067 TCCAGAAGGAGTCCACCCTGCACCTGGT 1204094 Score = 127 bits (140), Expect = 5e-24 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||| || || ||||| || || || |||||||||||||| | ||| || | Sbjct 1203661 CAGATCTTCGTAAAGACCCTCACTGGCAAGACCATCACCCTCGAGGT--AGAGCCCAGTG 1203718 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 1203719 ACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 1203778 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| ||||| || | || || | || || ||| Sbjct 1203779 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAACA 1203838 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | || ||| Sbjct 1203839 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGA 1203879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203682710697936