Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 145 7e-30
seq3082 123 2e-23
seq3135 111 1e-19
seq3126 109 5e-19
seq3071 84.2 2e-11
>seq2965
Length=1497097
Score = 145 bits (160), Expect = 7e-30
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| ||| ||||||||| ||||| |||||||||||||||||| |||| ||
Sbjct 1204094 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCC 1204035
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| ||||| ||||| | ||| ||||| | ||| | || ||||||||| |
Sbjct 1204034 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 1203975
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||| | | | ||||| || | ||| ||||| | || || || ||
Sbjct 1203974 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTG 1203915
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || ||||| ||||| |||||||||
Sbjct 1203914 CCAGTGAGGGTCTTCACGAAGATCTGCATG 1203885
Score = 143 bits (158), Expect = 2e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| ||| ||||||||| ||||| ||||| |||||||||||| |||| ||
Sbjct 1203866 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCC 1203807
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| ||||| ||||| | ||| ||||| | ||| | || ||||||||| |
Sbjct 1203806 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 1203747
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||| | | | ||||| || | ||| ||||| | || || || ||
Sbjct 1203746 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTG 1203687
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || ||||||||||| ||||||||
Sbjct 1203686 CCAGTGAGGGTCTTTACGAAGATCTGCAT 1203658
>seq3082
Length=10725151
Score = 123 bits (136), Expect = 2e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | |||||| ||||| ||| ||| ||||| ||||| ||||| || || |||||
Sbjct 1251454 AGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 1251395
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || || || | ||| ||||| | |||| || ||
Sbjct 1251394 CCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 1251335
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| ||| ||| || ||||| | | |||||||| | ||||||||||| ||
Sbjct 1251334 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTG 1251275
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||| ||||| ||||| ||||||||
Sbjct 1251274 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237
Score = 120 bits (132), Expect = 3e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | |||||| ||||| ||| ||| ||||| ||||| ||||| || || |||||
Sbjct 1251226 AGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 1251167
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || || || | ||| ||||| | |||| || |||
Sbjct 1251166 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCC 1251107
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| ||| ||| || ||||| | | |||||||| | ||||||||||| ||
Sbjct 1251106 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTG 1251047
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || ||||| || || ||||| || ||||| ||
Sbjct 1251046 ATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1251006
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | ||||| | ||||| ||||| || ||| ||||| ||||| |||||
Sbjct 1251695 ACAGCCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTC 1251636
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| || ||||| | || || ||||||||||| || || || || | ||| ||||| |
Sbjct 1251635 AGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 1251576
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
|||| || || || ||| ||| || ||||| | | ||||| || | |||
Sbjct 1251575 AGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 1251516
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| |||| || || || || || ||||| ||||| ||||| ||||||||
Sbjct 1251515 CACTTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465
>seq3135
Length=60673567
Score = 111 bits (122), Expect = 1e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||| ||||||||||| ||||| ||||| || || |||| || ||||| |||||||| ||
Sbjct 60530414 CTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGCAAA 60530355
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
|| |||| || | ||||| | || | || ||||||| | || |||| |||| ||
Sbjct 60530354 TACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGT-CTTGGATTTTGGCTTTGACAT 60530296
Query 41791 CGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
||| |||||||| | ||| ||||| | || || || || ||| | || ||||| |
Sbjct 60530295 TCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGTCTTCA 60530236
Query 41850 CGAAAATCTGCAT 41862
|||| ||||||||
Sbjct 60530235 CGAATATCTGCAT 60530223
>seq3126
Length=40167016
Score = 109 bits (120), Expect = 5e-19
Identities = 150/209 (72%), Gaps = 7/209 (3%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| || || ||| ||| || || ||||| ||||| ||||| || | | || ||
Sbjct 36688778 ACCAGGTGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTCCAACCATCCTCC 36688837
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||| |||| |||||||||||||| ||| || || | || | |||||||||||| |
Sbjct 36688838 AGCTGTTTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGGATGCTCTCCTTGTCTTGG 36688897
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
| ||||| || ||| ||||| || | ||| ||||| | | | || |||
Sbjct 36688898 A--TTTTGGTT-----TTGACTTGGTGTCACTGGGCTCGACCTCGAGGATGGTGGTCTTA 36688950
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||||| ||||| ||||| ||||||||
Sbjct 36688951 CCCGTCAGGGTCTTCACGAAGATCTGCAT 36688979
>seq3071
Length=8717935
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734
||||||||||| ||||| ||||| || || |||| || ||||| |||||||| ||||||
Sbjct 8140276 TTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGCAAATATC 8140217
Query 41735 AGGCGCTGTTGGTC 41748
|||||||| |||||
Sbjct 8140216 AGGCGCTGCTGGTC 8140203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462285831452800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |