Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq86 89.7 5e-13 >seq86 Length=9768497 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| || |||||||||||||| || | || ||||| ||| |||||||| Sbjct 5480119 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCTTG 5480060 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | |||||| || | ||||| || || |||||||| || || || || | ||||| || Sbjct 5480059 AGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGGC 5480001 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||| || | |||||||||||| || |||||||| || ||||| ||||| Sbjct 5479250 ATGTAAGTGTCAATAAGGAGACTGTACATTTCGGAATGTATGTTTTCCATGGCAATCTGG 5479191 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || |||||||| || || || || | ||||| ||||| Sbjct 5479190 AAGCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTC 5479153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511396251181480