Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq5 165 6e-36 seq17 102 6e-17 seq10 89.7 4e-13 >seq5 Length=43145420 Score = 165 bits (182), Expect = 6e-36 Identities = 258/367 (70%), Gaps = 13/367 (4%) Strand=Plus/Minus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 || |||| |||||| || |||| ||||||||||||||| | | |||||| || || Sbjct 7905180 TAGTAATCATTCTTTTCCTATAATTCAAATTTGTACTTGGTGCCTTTCTCCTCCTGGGTC 7905121 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | |||||| | |||||| |||||| ||| |||| | || || |||||| Sbjct 7905120 TCAGAAAGCATACTTGGGCATTCTA----------GTAGTTCTTCAAATTAATTTCTGG- 7905072 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 | ||| |||||| |||||| || ||||| |||| | |||||| || || |||| || | Sbjct 7905071 AGAAATGTGTCATTTTCAAACTCCTGCATCATCCATGCCACAAATAGCTTGAGATGGCCT 7905012 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | |||||||||| |||| | |||||||| | ||||| |||||||| || Sbjct 7905011 GGCCCAGTCATAGCTTCCGTATAAATGGAACTACCCGTCACCATCCAAACCATGTCCAC- 7904953 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 ||||||||| ||||||| || | || ||| |||| || | ||| | | | | Sbjct 7904952 TTATTTGCTGATTCTGGGTGCCCAAGAAACGATAAGCCATCCTCCAGACT-TGGGGGAGA 7904894 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 ||||||||| |||||| | ||||| ||||| | | ||||| | | ||| |||| | Sbjct 7904893 CAATGAGCTCCTTGTGGAGGGTCCTTGAGTTCTCTCTTTAGAACTATACTAACTCTGTCC 7904834 Query 4327 TTTAAAG 4333 ||||||| Sbjct 7904833 TTTAAAG 7904827 >seq17 Length=30750820 Score = 102 bits (112), Expect = 6e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | || || || | |||||||||| |||| ||||| || ||||||||||| Sbjct 29276345 CTTGAGTTCTCTACTTAGTACTATATTAATTCTGTCTTTCAAAGGTCGATTCTTCTCAGG 29276286 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 || |||||||| ||||| ||||||| ||||| | |||||||||| || Sbjct 29276285 AAGGGAGAACCAGGTCTTCCTACCCATGATCACCAGATTCTGTTTACCT 29276237 Score = 96.9 bits (106), Expect = 3e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4061 TGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCC 4120 ||||||||| | ||||| |||||||||||| ||||||| |||||| || |||||||||| Sbjct 29281474 TGTATTTCTTCAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCATGATCC 29281415 Query 4121 TAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 | ||||| |||||||| | || || ||| | ||| ||||| || Sbjct 29281414 TTGTCACGAACAGTTTGACATGGCCTGGCCGATCCATGGCTTCCTT 29281369 >seq10 Length=36757452 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 26957 GGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTAGG 27016 ||||| || || ||||| || ||||| || ||||||||| || | || || || Sbjct 5897085 GGGAG--ACACAGGTGCAACCCACAGTGACCCTCATCTTCTCCAGGCGGAAGGACAGCGG 5897142 Query 27017 GCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTTCAT 27076 |||| || | | | |||| || || ||||||| ||||| ||||| ||| |||| Sbjct 5897143 GCAGTTCTGGGGTTCCCTCCGCAGGACCAGGGTCTCTTGCTGGATGGGGACCGAGCTCAT 5897202 Query 27077 GTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTCCCA 27136 | ||| || | || || || || || | || ||| ||||||| || | || ||||| Sbjct 5897203 GAGGTGGTTCTCTTTGCCGTCCGCGTTGATGCAGCCTGAGTAGCGGCATTCGGCCTCCCA 5897262 Query 27137 AATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||||||||| ||||| || | || || ||||| Sbjct 5897263 GATCACAGAGGGGTATCTCTCAGGGTCCTCGTTGCG 5897298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361238700595589