Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq13 116 4e-21 seq86 114 2e-20 seq59 96.9 4e-15 >seq13 Length=33879094 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 19896919 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTGTAAGGTTCAATG 19896860 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | | | Sbjct 19896859 GACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGAAGA 19896800 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 19896799 CTGTTTCTTATACCATA 19896783 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| ||||||||||| || | || ||||| |||| | Sbjct 19876774 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACG 19876715 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | |||||| ||| | | || || ||||||| Sbjct 19876714 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGAAACTCAAAGATGTCTAAATGCCA 19876655 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 19876654 AGGCTCCAGGTAAAT 19876640 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || ||||| || || | | Sbjct 19856864 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAGA 19856805 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| ||||| || | ||||| | || || ||| |||| || | || ||| || | Sbjct 19856804 TGGCATAGTCCGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCGA 19856745 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| || ||||| || ||||| Sbjct 19856744 GTTCCACTGTGGTGACCCCACTGTATAACCCCTGGATTACTTTCAT 19856699 >seq86 Length=9768497 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | |||||||||||| ||||| || ||||| || || || || | Sbjct 5480121 CCTCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCT 5480062 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || || ||||| || ||||||||||| || ||||| || || ||||||| Sbjct 5480061 TGAGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGG 5480002 Query 24277 C 24277 | Sbjct 5480001 C 5480001 >seq59 Length=15337887 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT-CCGTC 24541 || ||||| || |||||| | |||| |||| | ||||| ||||| |||||| || || Sbjct 9879557 TCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCATC 9879616 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 24601 ||||| ||||| || |||| || || |||||| ||| | || || || | || | Sbjct 9879617 GCTGGCAGCAAAGAAAGCCAGAACGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGGGT 9879676 Query 24602 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 24661 | ||| | | || |||| || | ||| || || ||| | ||||||||||| ||||| Sbjct 9879677 -TCCCAGTGCTGAATGGCTTTGGAAAGATCTACCTCATCCGCGGTCCAAAATGAGGCCTC 9879735 Query 24662 TGCCTTTTTATACATATTCCAGATGTCATGATATT 24696 || || ||| ||| || ||| |||| || |||| Sbjct 9879736 GGCTTTCTTACACACATGCCAAGTGTCGTGGTATT 9879770 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT-CCGTC 24541 || ||||| || |||||| | |||| |||| | ||||| ||||| |||||| || || Sbjct 10657403 TCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCATC 10657462 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 24601 ||||| ||||| || |||| | || |||||| ||| | || || || | || Sbjct 10657463 GCTGGCAGCAAAGAAAGCCAGAATGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGGGC 10657522 Query 24602 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 24661 | ||| | | || ||||| || | ||| || || ||| | ||||||||||| ||||| Sbjct 10657523 TTCCCAGTGCTGAATGTCTTTGGAAAGATCTACCTCCTCCGCCGTCCAAAATGAGGCCTC 10657582 Query 24662 TGCCTTTTTATACATATTCCAGATGTCATGATATT 24696 || || ||| ||| | ||| |||| || |||| Sbjct 10657583 GGCTTTCTTACACACGTGCCACATGTGGTGGTATT 10657617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593700530304720