Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq19 250 3e-61 seq1 187 3e-42 seq5 154 2e-32 >seq19 Length=30225952 Score = 250 bits (276), Expect = 3e-61 Identities = 534/792 (67%), Gaps = 8/792 (1%) Strand=Plus/Minus Query 176451 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 176510 || ||||| | ||| | |||||||| || |||||| |||| || || || || | || Sbjct 25703801 ACCAACATCTACCTGCTCAACTTGGCCATTTCTGACCTGCTCTTCCTCTTCACACTTCCC 25703742 Query 176511 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 176570 || ||||| |||| ||| | || || | ||| ||||| || | |||| || Sbjct 25703741 TTCTGGATTTCCTATGTTGCATTGAATAAG---TGGGTGTTTGGACATTTCATGTGCAAG 25703685 Query 176571 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 176630 | || || | | ||| || ||||| | || |||| | |||||||||||| Sbjct 25703684 TTCCTGTCTGGCCTCTACTACGTGGGCTTGTACGGTGAGATCTTCTTCATCATCCTGCTG 25703625 Query 176631 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTA 176690 || | |||||||| || || | ||| ||||||| ||| || | | || || Sbjct 25703624 ACCATTGACAGGTACCTGGCCATCGTCCATGCTGTGTTTGCCCTGCGAGCCCGGACTGTG 25703565 Query 176691 ACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTT-GTTGTCCCTCCC 176749 || | ||| | | ||| |||| |||||| ||||||||| | | || ||||||| Sbjct 25703564 ACTTTTGGTGTCATAACCAGTGTCATCACCTGGGGCCTGGCAGGGCTAGCTG-CCCTCCC 25703506 Query 176750 TGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGATCCTTACTA 176809 |||||| |||| ||||| ||| || || || || |||| |||| || Sbjct 25703505 TGAATTCATCTTCCATGGGACCCATGAGCACTTTGAAGAATTTGTCTGTGGTCCTGTTTA 25703446 Query 176810 CCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAG 176869 ||||||| | | | |||| ||| ||| | | | | ||| || || | Sbjct 25703445 CCCAGAGGAGGAAGAAGACCACTGGAAGCGTTTCCAAGCTCTCAGGATGAACATTTTTGG 25703386 Query 176870 TCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTT 176929 |||| | ||||||||| |||||| | |||||||| | ||| || | || ||| | Sbjct 25703385 TCTCGCACTCCCTCTGCTCCTTATGGTTTTCTGCTACACGGGAATCATTAAAACCCTGCT 25703326 Query 176930 GAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGC 176989 | | | |||| ||||| ||||||||||||||| ||||||| |||||||| ||||| | Sbjct 25703325 GCGATGTCCCAATAAGAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATAATGGTCGT 25703266 Query 176990 CTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAAC 177049 || |||| |||| |||||||| |||||| | |||||||| || ||| ||||| | | | Sbjct 25703265 CTTTTTTATTTTCTGGACACCTTACAACCTGGTTCTCCTTCTCTCTGCCTTTGAAGTGA- 25703207 Query 177050 CCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAA 177109 |||| || | | | ||| ||| || || | |||||||||| |||| | | ||| | Sbjct 25703206 CCTTGTTGAACAACTGTGAGCA--GAACAAACAGCTGGACATGGCCCTGCAGGTGACAGA 25703149 Query 177110 AACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAA 177169 | ||| |||| ||||| || ||||||| | ||||| || |||||||| |||| Sbjct 25703148 GGTGATCGCCCACACCCACTGCTGTGTCAACCCCATCATCTATGCCTTCGTGGGAGAGAG 25703089 Query 177170 GTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTA 177229 ||| | | | ||||| |||||||||||||| | ||||| | || | |||| || Sbjct 25703088 GTTCCGGAAATACCTGCGCCACTTCTTCCACAGGAATGTGGCTGTGCACTTGAGCAAATA 25703029 Query 177230 CATCCCCTTCCT 177241 |||||||||||| Sbjct 25703028 CATCCCCTTCCT 25703017 Score = 250 bits (276), Expect = 3e-61 Identities = 534/792 (67%), Gaps = 8/792 (1%) Strand=Plus/Minus Query 9565 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 9624 || ||||| | ||| | |||||||| || |||||| |||| || || || || | || Sbjct 25703801 ACCAACATCTACCTGCTCAACTTGGCCATTTCTGACCTGCTCTTCCTCTTCACACTTCCC 25703742 Query 9625 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 9684 || ||||| |||| ||| | || || | ||| ||||| || | |||| || Sbjct 25703741 TTCTGGATTTCCTATGTTGCATTGAATAAG---TGGGTGTTTGGACATTTCATGTGCAAG 25703685 Query 9685 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 9744 | || || | | ||| || ||||| | || |||| | |||||||||||| Sbjct 25703684 TTCCTGTCTGGCCTCTACTACGTGGGCTTGTACGGTGAGATCTTCTTCATCATCCTGCTG 25703625 Query 9745 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTA 9804 || | |||||||| || || | ||| ||||||| ||| || | | || || Sbjct 25703624 ACCATTGACAGGTACCTGGCCATCGTCCATGCTGTGTTTGCCCTGCGAGCCCGGACTGTG 25703565 Query 9805 ACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTT-GTTGTCCCTCCC 9863 || | ||| | | ||| |||| |||||| ||||||||| | | || ||||||| Sbjct 25703564 ACTTTTGGTGTCATAACCAGTGTCATCACCTGGGGCCTGGCAGGGCTAGCTG-CCCTCCC 25703506 Query 9864 TGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGATCCTTACTA 9923 |||||| |||| ||||| ||| || || || || |||| |||| || Sbjct 25703505 TGAATTCATCTTCCATGGGACCCATGAGCACTTTGAAGAATTTGTCTGTGGTCCTGTTTA 25703446 Query 9924 CCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAG 9983 ||||||| | | | |||| ||| ||| | | | | ||| || || | Sbjct 25703445 CCCAGAGGAGGAAGAAGACCACTGGAAGCGTTTCCAAGCTCTCAGGATGAACATTTTTGG 25703386 Query 9984 TCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTT 10043 |||| | ||||||||| |||||| | |||||||| | ||| || | || ||| | Sbjct 25703385 TCTCGCACTCCCTCTGCTCCTTATGGTTTTCTGCTACACGGGAATCATTAAAACCCTGCT 25703326 Query 10044 GAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGC 10103 | | | |||| ||||| ||||||||||||||| ||||||| |||||||| ||||| | Sbjct 25703325 GCGATGTCCCAATAAGAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATAATGGTCGT 25703266 Query 10104 CTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAAC 10163 || |||| |||| |||||||| |||||| | |||||||| || ||| ||||| | | | Sbjct 25703265 CTTTTTTATTTTCTGGACACCTTACAACCTGGTTCTCCTTCTCTCTGCCTTTGAAGTGA- 25703207 Query 10164 CCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAA 10223 |||| || | | | ||| ||| || || | |||||||||| |||| | | ||| | Sbjct 25703206 CCTTGTTGAACAACTGTGAGCA--GAACAAACAGCTGGACATGGCCCTGCAGGTGACAGA 25703149 Query 10224 AACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAA 10283 | ||| |||| ||||| || ||||||| | ||||| || |||||||| |||| Sbjct 25703148 GGTGATCGCCCACACCCACTGCTGTGTCAACCCCATCATCTATGCCTTCGTGGGAGAGAG 25703089 Query 10284 GTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTA 10343 ||| | | | ||||| |||||||||||||| | ||||| | || | |||| || Sbjct 25703088 GTTCCGGAAATACCTGCGCCACTTCTTCCACAGGAATGTGGCTGTGCACTTGAGCAAATA 25703029 Query 10344 CATCCCCTTCCT 10355 |||||||||||| Sbjct 25703028 CATCCCCTTCCT 25703017 >seq1 Length=63520090 Score = 187 bits (206), Expect = 3e-42 Identities = 138/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||| ||||| ||| |||| ||||||||| ||||| | ||||||||| |||||||||||| Sbjct 9298302 AGGCTCGTGACGTGCGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGC 9298361 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| ||||||||| | || |||||||||||||||||||| ||||||||| | || Sbjct 9298362 ACGCCCAGGCCCATGTCCGCGGACCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCACC 9298421 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 ||||| |||||||| ||| ||||||||| ||||| ||||| Sbjct 9298422 ACGTAAAACTGGCAGAGGGCGTGGCAGGGAGGCAGCGCCAT 9298462 >seq5 Length=43145420 Score = 154 bits (170), Expect = 2e-32 Identities = 130/159 (82%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| ||||| | ||||||||| || |||||||| |||||||||||||| | ||| Sbjct 42310630 CAGCGCCGCAGCCGCTGCCTGAGGGTCTTCAGCTTTTCTCCCAGGGAGTTCACATGCTCC 42310689 Query 138142 TT--TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACT 138199 || | |||| | ||||||||| |||| |||||||||||| |||||||||||| Sbjct 42310690 TTGATATCTGG-----GTCGTGGTTCTCCGCCTTTGGCATCACCTCCGCCAGGTAAAACT 42310744 Query 138200 GGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||||| |||| ||| ||||| ||||||||||||| Sbjct 42310745 GGATCATCTCTGACAAGGCTTGGCAACCCAGGTAACCCT 42310783 Score = 114 bits (126), Expect = 2e-20 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 137924 AGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGC 137983 ||||| | ||||| | ||||||||||| ||||||||||| ||||||||||||||||| | Sbjct 42308492 AGTTTGTTATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACTCAC 42308551 Query 137984 TCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 ||||||| |||||||| ||||| || ||||||| Sbjct 42308552 TCATGGCTTTGTAGACACCTTTCTCTTGGAGCT 42308584 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/168 (74%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356 |||||| ||||| ||||||| |||||| || | ||||||| |||||||||||||||||| Sbjct 42311984 AAAGAAAGTCTTCACCCTGCCGAAGGCAGCTCGGAGCTCGCGGAGCATGTGGGGCAGGCC 42312043 Query 138357 GGTGGGCAATGTAGG-GCAGTCGTCCCCAGACTCACTG-TCATATTTGTTGTCGGCCCAC 138414 | || || || || ||| |||| |||||| || ||| | | | |||||| Sbjct 42312044 AGCTGG-AAAGTGGGCACAGCTGTCCTCAGACTGGGTGCCCATGCCT-TGGCCGGCCCCA 42312101 Query 138415 ACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATG 138462 | ||| ||||| | ||||||||| | ||||||| || ||| |||| Sbjct 42312102 AGCCCAGCCAGTAAGACCAGGCAATATAGCAGCGCTGAGCTGGGCATG 42312149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590055859649560