Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq69 441 9e-119 seq26 365 5e-96 seq52 291 1e-73 seq131 284 1e-71 seq24 156 5e-33 seq10 118 1e-21 seq65 82.4 9e-11 >seq69 Length=12829792 Score = 441 bits (488), Expect = 9e-119 Identities = 423/542 (78%), Gaps = 0/542 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||||||||||||||||||| | | | | ||| || |||| |||||||||||||| Sbjct 3806458 AGCAGGGCCTCGATGTCGGGCTCGATGTCGATGGTGGGGAAGCGCCGGCTGTACCTGCGC 3806399 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| |||||| | ||||||| |||||||||||| |||||||||||||||||| || Sbjct 3806398 ACCGGCACGCCGTCGGGGCCCACCAGGAACTTCTCGAAATTCCAGGCCACGTCGTTGTGG 3806339 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || |||||| ||| | ||||||||||||||||| | | ||||||||| Sbjct 3806338 CACACCGGGGACCAGATGATGGACCTGGGGTCGCTCACGAGCGCGGTGGGGTCGTCGCTG 3806279 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||||| | |||||||| || |||| |||||||||||| || ||| | || ||||| ||| Sbjct 3806278 GGCGCCAGGAGGGCCTCCCGCAGGAGGGCGAAGAGCGGGTGCGCCTTCGCCCCGTTCACC 3806219 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||||||||| | ||||| |||||||| || || | ||||||| ||| Sbjct 3806218 TCGCACTTCTCGAAGAGAGTGAAGTTGGGCTCGAACCCACCGCCGGACCGGACGTACTTG 3806159 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 || | ||| |||||| | |||| |||||| |||||||| ||||||||||| |||||| Sbjct 3806158 AGCAAGCGCAGGATCTCCTCTTTCTTGGCGTTCTCCTGGTGTCCGAACTGGTTGCACGGG 3806099 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || || ||||| ||||| || || | || |||||| |||||| ||||||||||| ||| Sbjct 3806098 AAGCCGAGCACCACCAGGCCGCGGGGCCCGAGGCGCGCCTGCAGGTCGTTCATCTGGGTG 3806039 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 | ||||| ||||| | |||||||||||||| |||||| ||||||||| ||| || Sbjct 3806038 AAGTCCCGCGCCGTGGTGCCTCAGAGGGACGCCACGTTCGCGATGAGCAGCACCTTGCTG 3805979 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | | | | | || || | || |||| | |||||| || ||||||| |||| Sbjct 3805978 CGCAGGGACTCGAGGGCCAGCGGCCCCCCGCCGGCCAGCGGGCGCGCGGAGAAGGGGTAC 3805919 Query 83597 AC 83598 || Sbjct 3805918 AC 3805917 >seq26 Length=25788011 Score = 365 bits (404), Expect = 5e-96 Identities = 375/490 (77%), Gaps = 9/490 (2%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||||||| |||||| ||| | | | | ||| || |||| |||||||||||||| Sbjct 24722931 AGCAGGGCCTCGGTGTCGG-CTCGATGTCGACGGTGGGGAAGCGCCGGCTGTACCTGCGC 24722873 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | ||| |||||| | ||||||| |||||||||||| ||||||||||||||||||||| Sbjct 24722872 GCCGGCACGCCGTCGGGGCCCACCAGGAACTTCTCGAAATTCCAGGCCACGTCGTTGCGG 24722813 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTC--------ATGT 83228 |||||||| |||||| || || ||||||||||| ||||| | | || Sbjct 24722812 CACACTGGGGACCAGATGGTGGTCTTGGGGTCGCTCATGAGCGCGGGGGGGCGGGGAGGT 24722753 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 ||| ||| |||||||| |||||||| || |||||||||||| |||| || ||| | | | Sbjct 24722752 CGTTGCTGGGCGCCGGGAGGGCCTCCCGCAGGAAGGCGAAGCGCGGGTGCGCCTTCACCC 24722693 Query 83289 CGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGA 83348 |||| |||| |||||||| |||||| | ||||| |||||||| || || || | || Sbjct 24722692 CGTTCACCTGGCACTTCTGGAAGAGAGTGAAGTTGGGCTCGAACCCACCGCCGGGCCTGA 24722633 Query 83349 CGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGT 83408 || ||| || | ||| |||||| | |||| ||| || |||||||| |||||||||| Sbjct 24722632 TGTACTTGAGCAAGTGCAGGATCTCTTCGTTCTTGGCTTTCTCCTGGTGTCCGAACTGGT 24722573 Query 83409 TACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCA 83468 | || ||||| || ||||| || || || || | || |||||| |||||| ||||||| Sbjct 24722572 TGCATGGGAAGCCGAGCACCACTAGGCCGCGGGGCCCGAGGCGCGCCTGCAGGTCGTTCA 24722513 Query 83469 TCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGA 83528 | || ||| | | ||| ||| || | |||||||||||||| |||||||||||||||| | Sbjct 24722512 TGTGGGTGAAGTTCCGCACCCTGGTGCCTCAGAGGGACGCCACGTTCTCGATGAGCAGCA 24722453 Query 83529 CCCGGCCCCG 83538 || ||| || Sbjct 24722452 CCTTGCCGCG 24722443 >seq52 Length=17111000 Score = 291 bits (322), Expect = 1e-73 Identities = 295/383 (77%), Gaps = 2/383 (1%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||||| ||||||||||||| || | | ||| | |||| ||||||||||||||| Sbjct 11001466 AGCAGGGCCCCGATGTCGGGCTCAACATCGATGGTGGGAAAGCGCTGGCTGTACCTGCGC 11001407 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| |||||| | |||||| |||||||||||| ||||||||||| | ||||||| Sbjct 11001406 ACCGGCACGCCGTCGGGGGCCACCAGGAACTTCTCGAAATTCCAGGCCACATTGTTGCGG 11001347 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||| || |||||| ||| || ||||||||||| ||||| | | ||||| ||| Sbjct 11001346 CACC--GGGGACCAGATGATGGACTTGGGGTCGCTCATGAGCGCGGTGGGGTCGTTGCTG 11001289 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||||||| |||||||| || ||||||||||||||| | |||||| | || | ||| ||| Sbjct 11001288 GGCGCCGGGAGGGCCTCCCGCAGGAAGGCGAAGAGCTGGTGTGCCTTCGCCCTGTTCACC 11001229 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||||||||| | |||| |||||||| || ||||| | ||||| ||| Sbjct 11001228 TCGCACTTCTCGAAGAGAGTGAAGTGGGGCTCGAACCCACCGCCAGGCCAGACGTACTTG 11001169 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 || | ||| || ||| | |||| || ||||| || ||| ||||| | ||| || || Sbjct 11001168 AGAAAGTGCAGGACCTCCTCGTTCTTGGTGTTTTTCTTGTGTCCGAAATAGTTGCAGGGA 11001109 Query 83417 AACCCAAGCACTACCAGCCCCCG 83439 || || ||||| ||||| || || Sbjct 11001108 AAGCCGAGCACCACCAGGCCGCG 11001086 >seq131 Length=3999256 Score = 284 bits (314), Expect = 1e-71 Identities = 228/275 (83%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||||||||||||||||||| | | | | ||| || |||| |||||||||||||| Sbjct 1298556 AGCAGGGCCTCGATGTCGGGCTCGATGTCGATGGTGGGGAAGCGCCGGCTGTACCTGCGC 1298615 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| |||||| | ||||||| |||||||||||| ||||||||||||||||||||| Sbjct 1298616 ACCGGCACGCCGTCGGGGCCCACCAGGAACTTCTCGAAATTCCAGGCCACGTCGTTGCGG 1298675 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || |||||| ||| | ||||||||||| ||||| | | ||||||||| Sbjct 1298676 CACACCGGGGACCAGATGATGGACCTGGGGTCGCTCATGAGCGCGGTGGGGTCGTCGCTG 1298735 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||||||| |||||||| || ||||||||||||||||| || ||| | || ||||| ||| Sbjct 1298736 GGCGCCGGGAGGGCCTCCCGCAGGAAGGCGAAGAGCGGGTGCGCCTTCGCCCCGTTCACC 1298795 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAA 83331 ||||||||||||||||| | ||||| |||||||| Sbjct 1298796 TCGCACTTCTCGAAGAGAGTGAAGTTGGGCTCGAA 1298830 >seq24 Length=27838296 Score = 156 bits (172), Expect = 5e-33 Identities = 191/254 (75%), Gaps = 9/254 (4%) Strand=Plus/Plus Query 83266 GAAGAGCGGATGTGCCCTTGCACCG-TTGACCTCGCACTTCTCGAAGAGCATAAAGTTCG 83324 ||||||||| || || ||| ||| || ||||| |||||| |||||||| | | ||| | Sbjct 25483279 GAAGAGCGGGTGCGCT-TTGATCCGGTTCACCTCACACTTCCCGAAGAGCGTGACGTTGG 25483337 Query 83325 GCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGG 83384 ||| ||| || || || ||||| | || ||| | ||| |||||| | |||| || Sbjct 25483338 GCTTGAACCCACCACCGGGCCGGACATATTTGAGGAAGTGCAGGATCTCTTCGTTCTTGG 25483397 Query 83385 CGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTC 83444 |||| |||||||| ||| ||||||| |||||||| | ||||| ||||| || | || | Sbjct 25483398 CGTTCTCCTGGTGTCCGGACTGGTTGCACGGGAAGCAGAGCACCACCAGGCCGC-AGGGC 25483456 Query 83445 CT-AGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGG 83503 || |||||| |||||| ||||||||||| ||| | |||| | ||| ||||||||| Sbjct 25483457 CTGAGGCGCGCCTGCAGGTCGTTCATCTGGGTGAAGCCCCG--CAGTG---CCTCAGAGG 25483511 Query 83504 GACGCTACGTTCTC 83517 ||||| || ||||| Sbjct 25483512 GACGCCACATTCTC 25483525 >seq10 Length=36757452 Score = 118 bits (130), Expect = 1e-21 Identities = 189/266 (71%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| || ||||||||| ||| ||| Sbjct 32350783 GCAGCTGCGCAGTATCTACGAGAGCA-GCCTGTCCATTGGCAACTTCGCCTCGCGCCTGC 32350725 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| | ||| | ||||||| Sbjct 32350724 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGGAAGCAGTACAACTGCA 32350665 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | || |||| || || Sbjct 32350664 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGGCTCGCATTAAGCTGATCCGCCATTAC 32350606 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| ||| ||||| |||||||||| | ||||| ||| Sbjct 32350605 GTGCAGCTGCTCTACCCCCGGGCCAAAAACGACCGCGTGTGGACCCTGGAGTTCGTGGGC 32350546 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||| ||||||| Sbjct 32350545 AAGCTGGACGAGCGCTGCAGGCGCCG 32350520 >seq65 Length=14109178 Score = 82.4 bits (90), Expect = 9e-11 Identities = 235/353 (67%), Gaps = 10/353 (3%) Strand=Plus/Minus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115 ||| ||| || |||||| ||||| | | | ||| || || | ||||||| | || Sbjct 4987442 GAGGAGGCGCTTGATGTCAGGCTCAATGTTGATGGTGTGAAAGGCGCGGCTGTAGCGTCG 4987383 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 | |||| || || | || | | |||||||||||||||||||| ||| || ||| Sbjct 4987382 GAAGGGCTCCCCCTCTGGTCCTATGAGGAACTTCTCGAAGTTCCAGGACACATCTGAGCG 4987323 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 | ||||||| ||| ||||||| ||| || ||| ||| | | ||| ||| Sbjct 4987322 CCGCACTGGACTCCACATGATGAGCTTGGGATCCGTCATGAGGGAAAACGGGTCATCGTG 4987263 Query 83236 AGGCGCCGGCAGGGCCTCTCGT--AGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTT 83292 ||| | || | || | || | ||| ||||||||| || || | | ||| ||||| Sbjct 4987262 AGG-GTAGG-GGAGCTTGTCCTTCAGGTAGGCGAAGACAGGGTGCTCGTTCTGC-CCGTT 4987206 Query 83293 GACCTCGCACTTCTCG--AAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACG 83350 ||||| ||||| | | ||||| ||||| | |||| ||| || |||||| ||||| Sbjct 4987205 CACCTCACACTTTTGGGCAAGAG--TAAAGGTGGGCTGGAATCCACCCCCAGGGCGGACA 4987148 Query 83351 TGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAA 83403 | ||| || || |||||| |||| || ||| |||||| | | ||| Sbjct 4987147 TACTTGAGACTGTTCAGGATCTCCTCATTTTGACAGTTCTCCTGGGGGCAGAA 4987095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608775195323560