Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq118 132 5e-26 seq16 123 3e-23 seq59 116 4e-21 seq86 105 7e-18 seq66 98.7 1e-15 seq54 87.8 2e-12 seq2 84.2 2e-11 >seq118 Length=4884071 Score = 132 bits (146), Expect = 5e-26 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||| | || || ||||| ||||| ||||||||| |||| || || || Sbjct 2270367 AATGCAGATCTTCATGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGATCAG 2270308 Query 40749 CGACAGCGTGCA-----AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 |||| | || || | |||||| || || | ||||| |||||||||||| | Sbjct 2270307 TGACACCCACCACTGAGAATG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCA 2270249 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| | || |||| || |||| |||||||| || | ||| ||||| ||| Sbjct 2270248 GACCAGCAGAGGCTGATCTTTGCCAGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGAC 2270189 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | ||| ||||| || || ||||| ||||||| || Sbjct 2270188 TACAACATCCAGAAGGTGAACACCCTGCACCTGGTCCTGCGCCTGAGGGGAGG 2270136 >seq16 Length=31710007 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||||||||||||||| || ||||| || ||||| ||||| ||||| ||||| || | Sbjct 26962110 TGGTGGCCTTCGCGGCTGTGGAGGGTGTGTTCTTCTCGGGGGCCTTCGCGGCCATCTTCT 26962051 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||||||||| ||||| || ||| ||||||||||||| ||||| Sbjct 26962050 GGCTGAAGAAGAGAGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCAGCAGGG 26961991 Query 117162 ACGAGG 117167 |||||| Sbjct 26961990 ACGAGG 26961985 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859 || ||| || || ||| |||||||||||||| | ||||| || |||||||||||||| Sbjct 26963985 TCAGGTGGAACGCTTCAGCCAGGAGGTGCAGGTCCCTGAGGCCCGCTGCTTCTACGGCTT 26963926 Query 116860 TCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||| ||| |||||||| |||||||| ||||| Sbjct 26963925 CCAGATCCTCATCGAGAACGTTCACTCGGAGATGTA 26963890 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||| || | ||| | ||||||||||||| || |||||||| || ||||| || Sbjct 26971936 GAGCCGCTCCTCAGAAAGAGCTCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCCTGAT 26971877 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || ||| |||||||| |||| ||||||| |||||||| | |||||||| Sbjct 26971876 ATCTGGAAGATGTACAAGCAGGCGCAGGCGTCCTTCTGGACGGCAGAGGAGGT 26971824 >seq59 Length=15337887 Score = 116 bits (128), Expect = 4e-21 Identities = 166/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 116581 GCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTG 116640 ||||||| | ||||||||||| || || | | ||||| || |||||| ||||||| Sbjct 10657661 GCTGCTGAGAGAGAACCCCCGGAGGGTCATCGTCTTCCCTATGGAATACCACCACATGTG 10657602 Query 116641 GCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAA 116700 || | ||| || || |||||||| || || ||||| | |||||||| || || ||||| Sbjct 10657601 GCACGTGTGTAAGAAAGCCGAGGCCTCATTTTGGACGGCGGAGGAGGTAGATCTTTCCAA 10657542 Query 116701 GGACA-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGC 116759 |||| ||| ||||||| | |||| | | ||| | | || || |||| | | Sbjct 10657541 AGACATTCAGC-ACTGGGAAGCCCTGAAGCCCGAGGAGAGATACTTTATATCGCACATTC 10657483 Query 116760 TGGCCTTTTTCGCCGCCAGCGACGGC-ATCGTCAACGAGAATCTGGTCGA 116808 |||| || || || |||||||| ||| || ||||| |||||| |||| || Sbjct 10657482 TGGCTTTCTTTGCTGCCAGCGATGGCAATAGTCAATGAGAATTTGGTGGA 10657433 Score = 82.4 bits (90), Expect = 8e-11 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 ||||| |||| || ||| || |||||||| ||||| | ||| | || || | Sbjct 9879059 TGGTGTCCTTTGCCATCGTGGAAGGCGTCTTTTTTTCCAGTTCTTTTGTGTGGATCTTCT 9879000 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 ||||||||||| | || ||||||| | ||| || || || || ||||| ||| | Sbjct 9878999 GGCTCAAGAAATGGGGACTCATGCT-GACCTCACCTTTTCCAGTGAACTCATTAGCAGAG 9878941 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCA 117213 ||| ||| |||||||| |||| | | ||| ||||||||||||||||||| Sbjct 9878940 ACGGGGGCTTGCATTGCAACTTATC-TACTTGATGTTCAAGCATTTGGTGCA 9878890 >seq86 Length=9768497 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || || || || ||| |||||||||| || ||| || Sbjct 5479986 GGAGAGCGCGTGGTGGCCTTTGCCGCGGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 5480045 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 | || || |||||||||||||| || |||||||| ||||| || || |||||| ||| Sbjct 5480046 TCAATCTTCTGGCTCAAGAAACGGGGACTCATGCCTGGCCTCACCTTTTCCAACGAACTC 5480105 Query 117152 ATCTCCAGGGACGAGG 117167 || ||| ||||||| Sbjct 5480106 ATTAGCAGAGACGAGG 5480121 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||||||| | ||||||||||| || ||||| | ||||| || |||||| ||| Sbjct 5477855 GAACCGCTGCTGAGAGAGAACCCCCGGCGCTTCGTCGTCTTCCCTATCGAATACCACGAC 5477914 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| ||||| || || ||||||||||| || ||||| | |||||||||| Sbjct 5477915 ATTTGGCAGATGTATAAGAAAGCCGAGGCGTCATTTTGGACGGCCGAGGAGGTG 5477968 >seq66 Length=13365902 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 || ||||||||| | |||||||| | ||||||| ||||||||| |||||||| || | Sbjct 1687767 GAAGGCATCCCCCCTGACCAGCAGAGGCTCATCTTCGCGGGCAAGCAGCTGGAAGATGGC 1687826 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 ||||| || ||||| ||||||||||| ||| |||| ||||| | || | || || Sbjct 1687827 CGCACTCTTTCTGACTATAACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTCCGTCTG 1687886 Query 40909 AGGGGCGGC 40917 ||||| ||| Sbjct 1687887 AGGGGTGGC 1687895 >seq54 Length=16718083 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 40683 CCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 40742 || || |||||| || ||| | || || |||| | | || |||| ||| | || || || Sbjct 7272583 CCTAACAATGCAGATCTTCATGAAGACCCTCATGAGTAAGACCAACACTCTTGAGGTGGA 7272642 Query 40743 AGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGC 40802 | | |||| | | | | |||||| || || | | ||| |||| ||| ||| | Sbjct 7272643 GCCTAGTGACACCATTGAGAACATCAAGGCCAAGATCCAAGGCAAGGAGGTCATTCCCCC 7272702 Query 40803 GGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 40862 | ||||||| | || |||| || |||| ||||||| || | || |||||| || Sbjct 7272703 G-ACCAGCAGAGGCTGATCTTTGCCAGCAAGCAGCTGGTAGATGGGCACACCCTGTCTGA 7272761 Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 ||||||||||||||| ||| |||| ||||| || Sbjct 7272762 CTACAACATCCAGAAAGAGTCCACCCTGCACCT 7272794 >seq2 Length=58787292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| |||||||| ||| | || ||||| | || ||| | Sbjct 1920517 TCAAGGCCAAGATCCAAGACAAGGAGGGCATACCCCCTGAGCAGCAGAGGCTGGTCTTTG 1920458 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | || | ||||||| || | | ||||||| ||||||||||||||||||||| ||| Sbjct 1920457 CCGGGAGG-AGCTGGAAGATGGGTGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCA 1920399 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | |||| || || || || ||||||| || Sbjct 1920398 CCCTGCCCCTGGTCCTGTGCCTGAGGGGAGG 1920368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515200916158640