Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq115 84.2 2e-11 seq15 84.2 2e-11 >seq115 Length=5499404 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| || | || ||||| ||||||||||||||||| || ||| | Sbjct 2584484 TCTCAACACAGGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTATGTCC 2584543 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| | || || || ||||| |||| |||| |||||||| ||||| || |||||||| Sbjct 2584544 ATCTTTCAGGTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCCTCCTT 2584603 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 |||| || || ||| || | ||| |||||| | || || || || | Sbjct 2584604 ATCTG-GATCTTGGTTTTTACATTTTCTGTTGTGTCCAAGGGTTCAGTCTTGAGCGTGAT 2584662 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || || ||||||||||||||||| || Sbjct 2584663 GGTCTTCTCAGTAAGGGTTTTTACAAAAATCTGGAT 2584698 >seq15 Length=31830809 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | |||||||| | || | || ||||| ||||||||||||||||| Sbjct 647103 ACCACCACGGAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGA 647162 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| | || || || || || |||||| |||| || | |||||||| ||||| Sbjct 647163 CAAAGTACATCCATTTTCCAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGG 647222 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||| ||||| || || || || || | || | ||||| | | || || Sbjct 647223 AATGCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAAC 647282 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 118736 ||||| | | || || || | || |||||||||||||| ||| Sbjct 647283 CTCGAGCATGATGGTCTTCCCCGAGAGGGTTTTTACAAAAATGTGC 647328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433815389332588