Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq16 107 2e-18 seq86 102 8e-17 >seq16 Length=31710007 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 15882 AACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACA 15941 || |||||||||| ||| | || || ||||||||| | | | || |||||||| | Sbjct 26953111 AAATTTAAAAATCTGCATCCAAAGTGAAGACATTATCTGTGGTTTCTGCCATAACTGCAA 26953170 Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001 ||||| || ||||| || ||||||||||||||||| |||||||| ||||| | Sbjct 26953171 AACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGT 26953230 Query 16002 TTTCCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| || ||||||| || Sbjct 26953231 TTTCCATAAAATCGAAGGGATTTTCTG 26953257 >seq86 Length=9768497 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | ||||| ||||| || || || ||||| ||||| ||||| || Sbjct 5480119 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCTTG 5480060 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| || || | ||||| |||||||||||||| || ||||| || |||||||| || Sbjct 5480059 AGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGGCC 5480000 Query 16379 ACCAATCGCTCACC 16392 |||| ||||| || Sbjct 5479999 ACCACGCGCTCTCC 5479986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462495586605400