Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq49 1218 0.0 seq111 116 3e-21 >seq49 Length=17942781 Score = 1218 bits (1350), Expect = 0.0 Identities = 1254/1633 (77%), Gaps = 64/1633 (4%) Strand=Plus/Minus Query 107144 AGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACAT--CTATCTTTACCATCACTC 107201 ||||||| ||| |||| || ||||| || |||||| || ||| ||| | ||| | Sbjct 15206402 AGGCAGGTCTTTGTTGAGCATGTTTGTGTAGAGAAGAAATACCTAG-TTTGCTGTCAGTT 15206344 Query 107202 TGGAGTTGAACTTGATGTTC-------TG-------GATTAGTTTGTAATTAAAGGCATT 107247 ||||||||| ||||| ||| || | ||||||||||| | ||||||| Sbjct 15206343 TGGAGTTGAGCTTGACATTCCCGTGAATGCGCTCATGGTTAGTTTGTAACTGCAGGCATT 15206284 Query 107248 TTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGATCTCCC 107307 | |||| |||||||| | |||||| || || ||| || ||| Sbjct 15206283 TGGTTCCATCCAAGGAGCCTGTCCTCCTGCTCCCCGGTGTGCA-------CTGG------ 15206237 Query 107308 ATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCC 107367 ||||||||||| ||||||| || || ||||| |||| |||||| | Sbjct 15206236 ---CCATGAAGATGATCCCATGGAAGA-GATTCT--GCCGGCATTATCACATGTGGGTTC 15206183 Query 107368 TGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTG 107427 |||||| || ||| |||||||| ||||| || |||||||||| ||||| | || |||| Sbjct 15206182 TGGGCTTTTACATGGTGCTGGCCATTGTTGCTTTGAGACTTTCTCTCAGACTGAAGTGTG 15206123 Query 107428 ATGTAGATTCCTTGGATCTGGAGTCCAGGGA-CTTCCAGAGTCAGCACTGTAGGGACATG 107486 | | || || || |||| |||| ||| ||||| | |||| |||||||| | || Sbjct 15206122 ACTTTAATCAACTGTATTTGGACTCCAAGGAACTTCCC-ACTCAGTACTGTAGGAATATC 15206064 Query 107487 TTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGA 107546 |||||| ||||||| |||| |||||||| |||||||||||||| |||||| | || Sbjct 15206063 GTGTACAGATCCCTGAAGTTGCCGGCAAAGAGGTCCATCAACTGTTCGGGGATCTCCAGA 15206004 Query 107547 GGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGG 107606 || |||| |||||||||| |||||| |||| | |||||||| || ||||| |||||| Sbjct 15206003 GGAGACCGGGAAGCAGTGACCCAGGCTGTCCTGAATAACCTGGAGGTCAAGAAGAAGCGG 15205944 Query 107607 TCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCC 107666 |||| || | | | | || ||| || || ||||||| || |||||||||| Sbjct 15205943 AAGCCTTTCTTGGACGCTGACTATGTCACTATGGCCGGAGACTGCGAAGACTTCAAGGCC 15205884 Query 107667 CAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTAC 107726 |||||| ||| | |||||| ||||||| ||||||||| |||||||||| || || ||| Sbjct 15205883 AAAAGGAGGTTTGTGCAGTTCTCACTGAGCAAAGAAGAGTTAGACTTCCCTATCGCATAC 15205824 Query 107727 TCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCC 107786 || |||||||| || |||||||| ||||||||||| ||||||||||||| |||||||| Sbjct 15205823 TCCATGGTGGTTCACGAGAAGATCGAAAACTTTGAGAGGCTGCTGCGAGCTGTGTATGCA 15205764 Query 107787 CCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCG 107846 ||||||||||||||||| ||||| ||||| | |||||| ||||| || |||||||||||| Sbjct 15205763 CCTCAGAACATATACTGCGTCCATGTGGACGAGAAGTCTCCAGAAACATTCAAAGAGGCG 15205704 Query 107847 GTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTG 107906 |||| ||| ||| ||| |||||||| ||||||||||| ||||| ||| | || | ||| Sbjct 15205703 GTCAGGGCGATTGCTTCGTGCTTCCCAAATGTCTTCATAGCCAGCAAGCTAGTTCGAGTG 15205644 Query 107907 GTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAG 107966 |||||||| ||||||||||| ||||| || |||||||| || ||||| ||| | || ||| Sbjct 15205643 GTTTATGCTTCCTGGTCCAGGGTGCAGGCCGACCTGAATTGCATGGAGGACCTACTGCAG 15205584 Query 107967 AGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACC 108026 ||||||||||||||||| ||| | ||||| || |||||||||||||| || ||||||||| Sbjct 15205583 AGCTCAGTGCCATGGAAATACCTGCTGAACACCTGCGGGACAGACTTTCCTATAAAGACC 15205524 Query 108027 AATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG 108086 |||||||||||||||| |||||| ||||||||||| || || |||||||||||||| || Sbjct 15205523 AATGCCGAGATGGTCCGGGCCCTTAAGATGTTGAACGGGAAAAACAGTATGGAGTCAGAA 15205464 Query 108087 GTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTG 108146 |||| ||| | |||||||| |||||||| || | |||| ||||| ||||| || Sbjct 15205463 ATACCAAGTGAATACAAAAAAACCCGCTGGAAGTATCACTATCTGGTGAAGGACACCTTG 15205404 Query 108147 TACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAAT 108206 |||| |||| ||||| ||||||||||||||| |||| || |||||||||| || ||| Sbjct 15205403 TACCTGACCAACAAGAAGAAGGACCCTCCCCCCAATAACGTAACCATGTTCACTGGCAAT 15205344 Query 108207 GCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAA 108266 |||||| ||||||| ||||| | ||| || || || |||||| | ||||| ||||||||| Sbjct 15205343 GCCTATATTGTGGCTTCTCGGGACTTCGTTCATCACGTCTTAAATAACCCCAAATCCCAA 15205284 Query 108267 AGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTT 108326 |||| |||| |||| |||||||||||| || |||||||| ||||||||||||||||| Sbjct 15205283 CAACTGATTGAGTGGGCCAAAGACACCTACAGTCCCGACGAGCACCTCTGGGCCACCCTG 15205224 Query 108327 CAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGAC 108386 |||||||| | |||||||| |||||| |||| ||||||||||| ||||||| ||| Sbjct 15205223 CAGCGTGCCTCCTGGATGCCCGGCTCTTCTCCTTTGCACCCCAAGTACGACATCTCGGAC 15205164 Query 108387 ATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGG 108446 ||||| ||||||||||||| |||||||||||| | ||||||||||| |||||| |||| Sbjct 15205163 ATGACCTCCATCGCCAGGCTGGTCAAGTGGCAGGAACACGAGGGAGACGTCAGCCGGGGG 15205104 Query 108447 GCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGG 108506 || ||||| | || ||||| |||||||| | | | |||||||| |||| ||||| ||| Sbjct 15205103 GCTCCTTACGGACGTTGCTCCGGAATCCACCAGCGCGCCATCTGTGTTTATGGGGCTGGG 15205044 Query 108507 GACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTG 108566 |||||| ||||||| || ||||||||||| || |||| |||||||||||||||| |||| Sbjct 15205043 GACCTGCACTGGATGCTGCAGAACCATCATCTGCTGGCCAACAAGTTTGACCCGAAGGTG 15204984 Query 108567 GATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACT 108626 || ||||| || || ||||||||||| |||||||| || || ||||||||||| ||| | Sbjct 15204983 GACGATAATGTTCTCCAGTGCTTAGAGGAGTACCTCCGGCACAAGGCCATCTACGGGGTT 15204924 Query 108627 GAACTTTGA-----GCTGCACTGTG--GGCCAGGGA-----CTGTGCCAACATGCCCAGG 108674 | || ||| |||||| ||| | ||||||| ||||| ||| | |||| Sbjct 15204923 GGGCTGTGAGGCACGCTGCAGAGTGCTGCCCAGGGAGGCGGGTGTGCAGACACG-CCAGA 15204865 Query 108675 GCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCAGG 108734 || ||| || ||||||||| |||||| |||| ||| ||||| |||| || Sbjct 15204864 GC---CTG---------GGTGTGGGGGACCAGGGCTCTGGACTCCGTGGCA-CCCCTAGA 15204818 Query 108735 GTCAGAGGGCTGC 108747 || ||||||| Sbjct 15204817 AGAAGGGGGCTGC 15204805 >seq111 Length=6053440 Score = 116 bits (128), Expect = 3e-21 Identities = 576/899 (64%), Gaps = 55/899 (6%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||| || || |||||| ||||| || || || ||||| ||| | || Sbjct 2828645 CCCCTTAGTAAAGAGGAAGCAGGCTTCCCGATTGCATATTCCATAGTGGTTCATCACAAA 2828586 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| || | ||| | ||| |||||||| | || || || Sbjct 2828585 ATTGAAATGCTTGACAGGCTCCTAAGGGCCATTTATATGCCTCAGAATTTCTATTGCATC 2828526 Query 107808 CACGTGGATGTGAAGTCCCCAGAG-ACT--TTCAAAGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || || |||| ||| || || || || || | ||| ||| Sbjct 2828525 CATGTGGACAAAAAATC---AGAGGACTCCTTTGTAGCTGCAGTGAAAGGCATCGCGTCC 2828469 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| |||||||| |||||||| |||||| ||||| || || || ||| Sbjct 2828468 TGTTTCAGGAATGTCTTTGTGGCCAGTCAGTTGGAGAGCGTGGTCTACGCGTCGTGGAGT 2828409 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGA 107982 | ||||| |||||||| ||||| ||| | ||| | || |||| | ||||| |||| Sbjct 2828408 CGGGTGCAGGCTGACCTCAACTGCATGAAGGACCT-CTACAGAA-TGAGTGCAGACTGGA 2828351 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||||||| | || || |||| || || || || || ||||| || |||||| Sbjct 2828350 AGTACTTGATCAACCTTTGTGGGATGGATTTTCCTATTAAAACCAACCTGGAAATGGTCA 2828291 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTTCTGAGT 108099 | |||||| || | |||| | |||| |||| | | || | || || Sbjct 2828290 GGAAGCTCAAGTCCTTCATGGGTGAAAACAACCTGGAAACAGAGAAGATGCCATC----- 2828236 Query 108100 CCaaaaa--aaaTCGCTGGAAA------TA------CCGCTATG---AGGTGACAGACAC 108142 ||| ||| | | | |||||| || | | ||| || |||||||||| Sbjct 2828235 CCATAAAGCAGAAAGGTGGAAAAGGCATTACGCAGTCATCGATGGAAAGCTGACAGACAC 2828176 Query 108143 ACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGG 108202 | | ||| ||| || | | | ||| || || | || || | ||| |||| Sbjct 2828175 A-GGCACC--GCCA--AA----ACGCAGCCT-CCACTCAAAA--CGCCTCTTTTCTCAGG 2828128 Query 108203 GAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAA-CCCTAAAT 108261 || |||||||||||||| | | | | ||| | || | || || | || Sbjct 2828127 GAGTGCCTATTTTGTGGTCAGCAGGGAGTATGTGGGCTACGTGCTGGAAAATGAAGACAT 2828068 Query 108262 CCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCA 108321 || |||| | | || |||| | ||||| || ||||| || || | |||||||||| Sbjct 2828067 CCAAAAG-TTCATGGAGTGGGCGCAGGACACATACAGCCCTGATGAGTATCTCTGGGCCA 2828009 Query 108322 CCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCC---TAGCCACCCCAAGTATCACA 108378 | | ||| | | ||| | || || ||| | || ||||| |||||| || Sbjct 2828008 CGATCCAGAGGGTCCCGGAGGCCCCAGGTTCTCTACCGCTGAGCCA---CAAGTACGACC 2827952 Query 108379 TCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCA 108438 | || |||||| || | |||||| | ||||||||||||||| ||| || || || | Sbjct 2827951 TGTCTGACATGCAGGCTGTTGCCAGGTTTGTCAAGTGGCAGTACTTCGAAGGTGACGTTA 2827892 Query 108439 GCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACG 108498 || ||| || || ||| |||||||| || |||| | | | | ||||||| | Sbjct 2827891 ACAAGGGCGCTCCCTATCCACCCTGCGACGGTGTCCACGTGCGCAGCGTGTGCATTTTTG 2827832 Query 108499 GGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | ||||| ||| || |||||| || | || || ||| | || || || ||||||||| Sbjct 2827831 GAGCCGGTGACTTGACCTGGATGCTGCGCAAACACCACTTTTTTGCCAATAAGTTTGAC 2827773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348256749790686