Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq86 87.8 2e-12 >seq86 Length=9768497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||| ||| |||| || | |||| ||| || | | || ||||| ||||| | Sbjct 5481108 TAAAAGTCAGCATCCAAAGTAAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCTC 5481049 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || | ||||| || ||||||||||| || || |||||||| || ||||| ||| Sbjct 5481048 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAAATATTCTCC 5480989 Query 13976 ATAAAATCAAATGGATTT 13993 || || || ||||||||| Sbjct 5480988 ATGAAGTCGAATGGATTT 5480971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | || |||||||| || |||||||||||||| || ||||| Sbjct 5479251 AATGTAAGTGTCAATAAGGAGACTGTACATTTCGGAATGTATGTTTTCCATGGCAATCTG 5479192 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 5479191 GAAGCCATAGAAACAGCGGGCTTCTG 5479166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482328482760520