Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13 111 1e-19 seq15 93.3 4e-14 >seq13 Length=33879094 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || || ||||| || || || || || ||||| || || || || Sbjct 19878349 ACCTCATCTTTGCTGGTATATTCTACTATCTCTGTGCACAGGTTGCTGCATTTGATTGTT 19878290 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || |||||||| || |||||||| ||||| ||||||||||||||||| || Sbjct 19878289 CCCAGGTTCTGTTGGTTGCTCTTCCGATTGCAGGAATCTTTGTAGAGCATGTACGGGGTA 19878230 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||| ||||| ||||| || Sbjct 19878229 CCCGTCTCTGTCTGGGACTCAATGATGGC 19878201 >seq15 Length=31830809 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 31195 GCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGA 31254 ||| ||||| ||||| || || | || || || |||| |||| |||||||| || || Sbjct 647328 GCACATTTTTGTAAAAACCCTCTCGGGGAAGACCATCATGCTCGAGGTTGAACCCTCAGA 647269 Query 31255 CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCA 31314 || | | ||| || || | || ||| ||||||||| | || || || ||||| Sbjct 647268 CACTATAAAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGCA 647209 Query 31315 GCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAACA 31373 | || || |||||||| || || ||||| | | ||| ||| || ||||| |||| Sbjct 647208 AAGGCTGATCTTCGCTGGTAAGCAACTGGAAAA-TGGATGTACTTTGTCTGATTACAACA 647150 Query 31374 TTCAAAAAGAATCGACTCTTCATCT 31398 ||||||| || || ||||||||||| Sbjct 647149 TTCAAAAGGAGTCCACTCTTCATCT 647125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445750580864880