Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13 113 6e-20 seq86 105 8e-18 seq59 105 8e-18 seq57 84.2 3e-11 >seq13 Length=33879094 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 19896919 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTGTAAGGTTCAATG 19896860 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | | | Sbjct 19896859 GACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGAAGA 19896800 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 19896799 CTGTTTCTTATACCATA 19896783 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || ||||| || | | Sbjct 19876774 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACG 19876715 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||| ||||| || | |||||| ||| | | || || ||||||| Sbjct 19876714 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGAAACTCAAAGATGTCTAAATGCCA 19876655 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 19876654 AGGCTCCAGGTAAATAGC 19876637 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63566 || |||| ||| | || |||||| ||| | | | ||| |||||||| || |||| Sbjct 19872982 ATGTAGCTGCCAGTAGCCCGAATACAACTCACAGCGACACCAATTCCCCCAGCAGATTTA 19872923 Query 63567 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATG 63626 || || ||||| || | || | ||||||||||||||||| ||||| ||||| |||| Sbjct 19872922 GAAATCAATGCACACTGCTTCAGAGTGTCATAGATGCCTTCAATGCTGTCATCTTTCATA 19872863 Query 63627 TTAAGTAGAAAACAGCTAGA 63646 | || || ||||||||||| Sbjct 19872862 CTCAGAAGGAAACAGCTAGA 19872843 >seq86 Length=9768497 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | |||||| ||||| ||||| || ||||| || || || || | Sbjct 5480121 CCTCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCT 5480062 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || || || || || || ||||||||||| ||||| || || ||||||| Sbjct 5480061 TGAGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGG 5480002 Query 33724 C 33724 | Sbjct 5480001 C 5480001 >seq59 Length=15337887 Score = 105 bits (116), Expect = 8e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT-CCATC 33988 || ||||| || |||||| | |||| |||| | ||||| ||||| |||||| ||||| Sbjct 9879557 TCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCATC 9879616 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 ||||| ||||| || |||| || || |||||| ||| | || || || | || | Sbjct 9879617 GCTGGCAGCAAAGAAAGCCAGAACGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGGGT 9879676 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 | ||| | | || |||| || | ||| || || ||| | ||||||||||| ||||| Sbjct 9879677 -TCCCAGTGCTGAATGGCTTTGGAAAGATCTACCTCATCCGCGGTCCAAAATGAGGCCTC 9879735 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 || || ||| ||| || ||| |||| || |||| || ||||| Sbjct 9879736 GGCTTTCTTACACACATGCCAAGTGTCGTGGTATTCCATAGGGAA 9879780 Score = 100 bits (110), Expect = 4e-16 Identities = 158/225 (70%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT-CCATC 33988 || ||||| || |||||| | |||| |||| | ||||| ||||| |||||| ||||| Sbjct 10657403 TCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCATC 10657462 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 ||||| ||||| || |||| | || |||||| ||| | || || || | || Sbjct 10657463 GCTGGCAGCAAAGAAAGCCAGAATGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGGGC 10657522 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 | ||| | | || ||||| || | ||| || || ||| | ||||||||||| ||||| Sbjct 10657523 TTCCCAGTGCTGAATGTCTTTGGAAAGATCTACCTCCTCCGCCGTCCAAAATGAGGCCTC 10657582 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 || || ||| ||| | ||| |||| || |||| || ||||| Sbjct 10657583 GGCTTTCTTACACACGTGCCACATGTGGTGGTATTCCATAGGGAA 10657627 >seq57 Length=15833023 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232 |||||||||||||||||||||||||||||| ||||| ||||| || |||||| ||||| Sbjct 12817667 GCTCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCCTGCACC 12817608 Query 188233 TACGAATGG 188241 | || |||| Sbjct 12817607 TCCGCATGG 12817599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629795249347920