Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq13 114 1e-20 seq86 93.3 4e-14 >seq13 Length=33879094 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||||| || || || ||||| || || ||||||||| Sbjct 19896919 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTGTAAGGTTCAATG 19896860 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | || || |||| || || |||||||||||||| || || ||||| Sbjct 19896859 GACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGAAGA 19896800 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 19896799 CTGTTTCTTATACCAT 19896784 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || || || ||||||||||| ||||| | || |||| | | | |||| || Sbjct 19903221 TCCAACCATAGAAGTGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 19903162 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| || || ||||||| || |||||||| | | || | || Sbjct 19903161 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCGATCAGCTGCCATCTTGAGAACAGTTT 19903102 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATA 37010 | ||||| || ||||| ||||| ||||| Sbjct 19903101 TCTGAGAGATTTCCCATACCGTCTTATA 19903074 >seq86 Length=9768497 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || ||||| || ||||| || | || ||||| | ||| ||||| || Sbjct 5480119 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCTTG 5480060 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || | ||||| |||||||||||||| || || ||||| || ||||| || Sbjct 5480059 AGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGGCC 5480000 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 5479999 ACCACGCGCTCTCC 5479986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468508173226160