Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq57 159 5e-34 seq13 116 5e-21 seq86 114 2e-20 seq59 93.3 6e-14 >seq57 Length=15833023 Score = 159 bits (176), Expect = 5e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 9230 TTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAA 9289 ||| |||||| | ||||||||| | |||||| || | |||||||||||| |||||||| Sbjct 12796130 TTTTTTATTAC-TGCTTCCAAAAACCGTAACACGTGTAGGAACAGATTGATAATATCCAA 12796188 Query 9290 GTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTG 9349 ||||| |||| | || | ||||| |||||||| || | ||||| || ||||| || Sbjct 12796189 GTAGAGGCTGATCGCAGCGAGGACATACTCTTCAGGAGACAATTTATGCATCAGTGAATG 12796248 Query 9350 CGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTC 9409 |||||||| || || ||||||||||| | |||||| || ||||| || ||||| ||| Sbjct 12796249 AGTGTCATAAATGATAAATCCGCAGAAAAGAAGGGCTCCTCCAGCAGCCAAGACCAACTC 12796308 Query 9410 CACTGTTTCACTTTGCACAAATATC 9434 || ||| ||||| || | ||||||| Sbjct 12796309 CATTGTGTCACTATGAAAAAATATC 12796333 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || | ||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 12817599 CCATGCGGAGGTGCAGGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 12817658 Query 9907 TGGAGGAGC 9915 ||||||||| Sbjct 12817659 TGGAGGAGC 12817667 >seq13 Length=33879094 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 19896919 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTGTAAGGTTCAATG 19896860 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | | | Sbjct 19896859 GACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGAAGA 19896800 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 19896799 CTGTTTCTTATACCATA 19896783 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || ||||| || || | | Sbjct 19856864 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAGA 19856805 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| ||||| || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 19856804 TGGCATAGTCCGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCGA 19856745 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| || ||||| || ||||| Sbjct 19856744 GTTCCACTGTGGTGACCCCACTGTATAACCCCTGGATTACTTTCAT 19856699 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | ||| |||| | Sbjct 19876774 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACG 19876715 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | |||||| ||| | | || || ||||||| Sbjct 19876714 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGAAACTCAAAGATGTCTAAATGCCA 19876655 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 19876654 AGGCTCCAGGTAAATAGC 19876637 >seq86 Length=9768497 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | |||||||||||| ||||| || ||||| || || || || | Sbjct 5480121 CCTCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCT 5480062 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || || ||||| || ||||||||||| || ||||| || || ||||||| Sbjct 5480061 TGAGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGG 5480002 Query 36300 C 36300 | Sbjct 5480001 C 5480001 >seq59 Length=15337887 Score = 93.3 bits (102), Expect = 6e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT-CCGTC 36564 || ||||| || |||||| | |||| |||| | ||||| ||||| |||||| || || Sbjct 9879557 TCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCATC 9879616 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT 36624 ||||| ||||| || |||| || || |||||| ||| | || | || | || | Sbjct 9879617 GCTGGCAGCAAAGAAAGCCAGAACGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGGGT 9879676 Query 36625 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 36684 | ||| | | || |||| || | ||| || || ||| | ||||||||||| ||||| Sbjct 9879677 -TCCCAGTGCTGAATGGCTTTGGAAAGATCTACCTCATCCGCGGTCCAAAATGAGGCCTC 9879735 Query 36685 TGCCTTTTTATACATATTCCAGATGTCATGATATT 36719 || || ||| ||| || ||| |||| || |||| Sbjct 9879736 GGCTTTCTTACACACATGCCAAGTGTCGTGGTATT 9879770 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT-CCGTC 36564 || ||||| || |||||| | |||| |||| | ||||| ||||| |||||| || || Sbjct 10657403 TCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCATC 10657462 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT 36624 ||||| ||||| || |||| | || |||||| ||| | || | || | || Sbjct 10657463 GCTGGCAGCAAAGAAAGCCAGAATGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGGGC 10657522 Query 36625 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 36684 | ||| | | || ||||| || | ||| || || ||| | ||||||||||| ||||| Sbjct 10657523 TTCCCAGTGCTGAATGTCTTTGGAAAGATCTACCTCCTCCGCCGTCCAAAATGAGGCCTC 10657582 Query 36685 TGCCTTTTTATACATATTCCAGATGTCATGATATT 36719 || || ||| ||| | ||| |||| || |||| Sbjct 10657583 GGCTTTCTTACACACGTGCCACATGTGGTGGTATT 10657617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658149443092760