Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq15 82.4 8e-11 >seq15 Length=31830809 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| ||||| || || | || | | ||| || || Sbjct 647128 TGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACATCCA-TTTTCCAGTTG 647186 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 |||||||| ||||||| | ||||||||| ||||| |||||||| || || ||| || Sbjct 647187 CTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTT 647246 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | || | ||||| | ||| || ||||| | | | ||||| || | Sbjct 647247 GGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACCTCGAGCATGATGGTCTTCCCCGA 647306 Query 139741 CAACGTTTTTACGAATATTTGC 139762 | |||||||| || || ||| Sbjct 647307 GAGGGTTTTTACAAAAATGTGC 647328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496046395928800