Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq86 93.3 6e-14 seq59 86.0 9e-12 >seq86 Length=9768497 Score = 93.3 bits (102), Expect = 6e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| || ||||| || || |||||||||||||| ||| |||||| | ||||| | Sbjct 5479996 TGGTGGCCTTTGCCGCGGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATCTTCT 5480055 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||||||||| || ||||||||||| || || || Sbjct 5480056 GGCTCAAGAAACGGGGACTCATGCCTGGCCTCAC 5480089 >seq59 Length=15337887 Score = 86.0 bits (94), Expect = 9e-12 Identities = 131/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 125017 ACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATC 125076 |||| ||| | ||| || || || ||||||| |||||||||| || ||||| |||| Sbjct 10657608 ACATGTGGCACGTGTGTAAGAAAGCCGAGGCCTCATTTTGGACGGCGGAGGAGGTAGATC 10657549 Query 125077 TGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATAT 125136 | ||||| ||| | | | ||||| | | | | || ||| || | ||||||| Sbjct 10657548 TTTCCAAAGACATTCAGCACTGGGAAGCCCTGAAGCCCGAG---GAGAGATACTTTATAT 10657492 Query 125137 CGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG-AATCGTCAACGACAATCTGTTGACA 125195 |||||||| |||| |||||||| | | |||||| ||| ||||| || ||| || || | Sbjct 10657491 CGCACATTCTGGCTTTCTTTGCTGCCAGCGATGGCAATAGTCAATGAGAATTTGGTGGAA 10657432 Query 125196 CGATT 125200 | ||| Sbjct 10657431 CCATT 10657427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741032901661640