Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq15 136 9e-27 seq115 122 2e-22 seq13 122 2e-22 seq51 118 2e-21 seq16 95.1 3e-14 seq12 89.7 1e-12 >seq15 Length=31830809 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || || ||||| || || ||||| | ||| | || | ||| ||| Sbjct 647125 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACATCCATTTTCCAGT 647184 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||| || || ||||| || ||||||||||| || ||||| |||||||| ||| Sbjct 647185 TGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATC 647244 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || |||||||||| || || || ||||| ||||| || | || ||||| || Sbjct 647245 TTGGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACCTCGAGCATGATGGTCTTCCCC 647304 Query 104534 GTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || ||||||||||| || ||| | ||| Sbjct 647305 GAGAGGGTTTTTACAAAAATGTGCGTCTTG 647334 >seq115 Length=5499404 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 104355 GATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTT 104414 |||| | || || || || ||||| || || ||||| | ||| || |||| || | Sbjct 2584495 GATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTATGTCCATCTTTCAGGT 2584554 Query 104415 GTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT 104474 | || |||||||| || || || || ||||||||||| ||||| || |||| ||| |||| Sbjct 2584555 GCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCCTCCTTAT-CTGGATCT 2584613 Query 104475 TTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAG 104534 | | ||||||||||||| || || ||||| || || || || ||||| ||| Sbjct 2584614 TGGTTTTTACATTTTCTGTTGTGTCCAAGGGTTCAGTCTTGAGCGTGATGGTCTTCTCAG 2584673 Query 104535 TAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||| ||||||||||| ||||| || ||| Sbjct 2584674 TAAGGGTTTTTACAAAAATCTGGATCTTG 2584702 >seq13 Length=33879094 Score = 122 bits (134), Expect = 2e-22 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || || || | ||| || || ||||| | ||| | || ||||| ||||| || |||||| Sbjct 14752914 GACTCCTTTTAAATGTTGTAATCAGACAAAGTACATCCATCTTCCAGTTGCTTACCAGCA 14752973 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 || || |||| || |||||||||| |||||||| |||||||| ||||| || |||||| Sbjct 14752974 AAGATCAGCCATTGCTGATCAGGAGCAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 14753033 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 ||||||| | || ||||| ||| || | || ||||| || | || |||||| Sbjct 14753034 TTTTCTATAGAGTCCGAGGGTTCACCCTTGAGCATGATGGTCTTTCCCAT-AGGGTTTTT 14753092 Query 104546 AC-AAATATCTGCATTTTG 104563 || ||| |||||||| ||| Sbjct 14753093 ACAAAAAATCTGCATGTTG 14753111 >seq51 Length=17756649 Score = 118 bits (130), Expect = 2e-21 Identities = 139/184 (76%), Gaps = 7/184 (4%) Strand=Plus/Minus Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || || ||| | | ||| | || ||||| | ||| || |||||||| || ||| | || Sbjct 16615618 TTGTAATCAAACAAAGTACATCCATCTTCCACTTGCTTACCAGCAAAGATCAGCTT-TGC 16615560 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 |||| |||||| ||||||| |||||| ||||| |||||||||||||||| ||||| Sbjct 16615559 TGATTAGGAGGAATTCCTT----ATCCTGGATCTTGGCTTTTACATTTTCTATCGTATC- 16615505 Query 104501 CTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||| ||||| || | || ||||| | ||| ||||||||||| ||||| || Sbjct 16615504 CTAGGGTTCAACCTCGAGCATGATGGTCTTCCTCACAAGGGTTTTTACAAAAATCTGTAT 16615445 Query 104560 TTTG 104563 ||| Sbjct 16615444 CTTG 16615441 >seq16 Length=31710007 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | || || || || ||||| || ||| | ||||| |||||| | || || Sbjct 26962118 GGAGAGAG--TGGTGGCCTTCGCGGCTGTGGAGGGTGTGTTCTTCTCGGGGGCCTTCGCG 26962061 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || ||||| ||| ||||||| |||||||| ||||| || | || ||||| ||||| | Sbjct 26962060 GCCATCTTCTGGCTGAAGAAGAGAGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTC 26962001 Query 269246 ATAAGCAGGGACGA 269259 || ||||||||||| Sbjct 26962000 ATCAGCAGGGACGA 26961987 >seq12 Length=33761702 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/186 (71%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 104375 TGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGC 104434 || || ||||||||||| || || || |||||||| || || | ||||| || ||| Sbjct 23446823 TGGATGTTATAGTCAGACAGGGTATGCCCATCTTCTAGCTGCTTGCTGGCAAAGATAAGC 23446764 Query 104435 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACG 104494 | | | || || || | || ||||| || || || ||||| || || ||||| || | Sbjct 23446763 CCCCGCTGGTC-GGGGAGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAGTG 23446705 Query 104495 GTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATC 104554 || | ||| || ||| |||| || || || |||||||||| || || || || || ||| Sbjct 23446704 GTGTTGCTGGGCTCTGCCTCAAGGGTGATGGTCTTACCAGAGAGGGTCTTCACGAAGATC 23446645 Query 104555 TGCATT 104560 |||| Sbjct 23446644 CACATT 23446639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151356518243012