Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq5 122 8e-23 >seq5 Length=43145420 Score = 122 bits (134), Expect = 8e-23 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| ||||||||| ||| ||||||||| Sbjct 42310781 GGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGGCGGAGGTGATG 42310722 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||||| || |||| || || ||||| ||||| || ||||| |||||||||||| Sbjct 42310721 CCAAAGGCGGAGAACCACGACCCAGATATCAAGGAGCATGTGAACTCCCTGGGAGAAAAG 42310662 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | | || ||||| ||||| Sbjct 42310661 CTGAAGACCCTCAGGCAGCGGCTGCGGCGCTG 42310630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447734510457680