Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 >seq1 Length=63520090 Score = 109 bits (120), Expect = 4e-19 Identities = 121/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 25497 GTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCG 25556 || |||| || |||||||| ||||| || ||||||||||||||| ||||| || || Sbjct 9298308 GTGACGTGCGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGCACGCCC 9298367 Query 25557 AACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTA 25616 | ||||||| || | |||| |||||| ||||| || || ||||| ||| |||||| Sbjct 9298368 AGGCCCATGT-CCGCGGACCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCACCACGTA 9298426 Query 25617 AAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 |||||| || | || || ||| ||||| || || || ||| Sbjct 9298427 AAACTGGCAGAGGGCGTGGCAGGGAGGCAGCGCCATCAGG 9298466 Score = 84.2 bits (92), Expect = 1e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 25772 TCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGT 25831 |||| || |||| || || || |||| |||||||||||| || || || || || |||| Sbjct 9301863 TCATATCTTTGTAGTCAGCCCCAAAATGCCTCCACTGGAAGCCATAGACGGGGCCCAGGT 9301922 Query 25832 CTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 | || || | | | ||| ||| | |||| ||||| | ||| || ||||||| Sbjct 9301923 CCCCTTCCTGGCGGCTAGAAAACCCCAGGCTGTCCAGGAAGTCCCGGGACCCGTTGGCGT 9301982 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||||||| || ||| | || || ||||||| |||||| || || Sbjct 9301983 CCCAGATCTTCACTCCCCTGGATGACAGTTCTTTGGCGTTTGTAGATCC 9302031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340125831132747