Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq5 210 3e-49 seq18 107 3e-18 >seq5 Length=43145420 Score = 210 bits (232), Expect = 3e-49 Identities = 229/304 (75%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 || || | |||||| | | ||||| || || |||||| | |||| |||||||| || Sbjct 25080054 GGGACACTGAACGCAGTGTAAGGACAGCCCTTCACGTTGTTGCAGATGAGAGACTGAATG 25080113 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 | || | |||| |||| |||| |||||||||||||| || || || || ||||||||| Sbjct 25080114 GAGGCGGTGTTGATGATCTCAAAACCCACGTCTCCGCCAAAAGTACTCGGCTTCCAGTAA 25080173 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 ||| || || ||| ||| ||||||| ||||| | ||| || || || |||| ||| Sbjct 25080174 TGCGGCGAACATATGGGGTTACCCATGAGTCCTTTCAAGGAGAAGGGCGCGCCCATCTCC 25080233 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||| |||||||||||||||||| || || ||||||||||||| | |||| ||| Sbjct 25080234 ACCATGGTCTCACCGAAGATGGCGTCTGGGCGAGGCTTTTCCACCAGAAGGCCGGGATAC 25080293 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 | ||||||||| || ||||| || || ||||| || || ||||| |||||||| ||| Sbjct 25080294 AGCTCCACAGCATCAATGTCACCATAGAGGGCTTCCAGCTCTGCAGCCATTTCCTTCTCT 25080353 Query 8972 CCTG 8975 |||| Sbjct 25080354 CCTG 25080357 Score = 132 bits (146), Expect = 7e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 9657 CCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGAT 9716 ||| ||||||||||| | ||||| || |||||||||||||| || |||| |||||||| Sbjct 25081862 CCACTCTGGATGTTCCTGCTTCAGCACGTCGCACACTCTGTTATGCTCCCGCAGCCAGAT 25081921 Query 9717 AGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776 || ||||||||||| ||||| |||||||||||||| || || || ||||| | ||| Sbjct 25081922 GGTGGCGTACATCATCAGACCCGGCACCAGGCCAAAGAGCTGCTGGCCTACAGCAAAACG 25081981 Query 9777 CATATTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGG 9836 | | || || | | ||| || |||||||||| | || ||| || || | ||| Sbjct 25081982 CGCCTGCTCAGGGATGTGGGGCGGGTAGATCATGTCTGCTTGAGTATCCTTAACTGTGGG 25082041 Query 9837 GGGATACATTTCACCGTCAATAATCT 9862 || ||||| || || | ||| |||| Sbjct 25082042 AGGGTACATCTCTCCATGAATTATCT 25082067 Score = 95.1 bits (104), Expect = 2e-14 Identities = 181/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| || ||||||||||| || | ||||| || || | Sbjct 25081324 CTTACCCTGCCAGCAATTTGCTTGGTGAACGATTCCACAAATGTGGTAAGTCCATGTTCC 25081383 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTA-GTCATACTTTGTTTTATCAATCTC 9440 | | ||| || |||||||| | ||| | || | || ||||| | ||| |||| Sbjct 25081384 ACTAATATAGAGTTGTTGTAGA-GAAACTGCTGAAAGTTATACTCCTGGTCATCGATCTG 25081442 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||| | || |||| || | |||||||||||| | |||||||||| ||| || || Sbjct 25081443 AAAGGTGTCAGGCACCAGGGGATGCCAGTGATAGAGTGTGTTAAACTCAGAAGCAATGCG 25081502 Query 9501 ATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 || ||||||||||| ||||||||||| || | |||| || | ||||| Sbjct 25081503 GTTCTGGTACTGGAATTGTTGGTTGAAGAGCAGTTCTGGGTCAAACTTCAGTTTGAAGTG 25081562 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 || ||||| | ||||| ||||| Sbjct 25081563 ATATCCGCTCAATTGCTGTACATA 25081586 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| ||||| ||| | ||||| || || ||||| | ||| ||| | || Sbjct 25083022 CTTACCCCATGGCCCAGGCCTGTGGTGAAAGCTGGCCCTCGTTTCTGATCTGTCTTGAAG 25083081 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||| || ||||| || ||| |||| || | ||||| | || ||||| ||||| || Sbjct 25083082 AACTGATGGGTGAAGTGCTGGGCAAAGAAAGTGAACATCATATTTGTGCCTTGGGGGTCA 25083141 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 || |||| |||| | |||||| ||||||| ||| Sbjct 25083142 GGGATGAACTTCCTTCTCAGAAGAACCTTTTCCAGAAC 25083179 >seq18 Length=30119850 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || || || || ||||| || |||||||| | || || |||||| ||| Sbjct 5679655 AAGCCCATCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAACAGATGGGATTC 5679714 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| || ||||||||||| |||||||| | ||||| || ||||| || |||||| Sbjct 5679715 CCTAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATCTCGATCATACTCTCCCCAAAGATG 5679774 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| || || ||||| | | || || | ||| ||||| | || ||||||||| Sbjct 5679775 GAGTTCGGTAGGCATTTTTCAAGAAGCAACCCTGGGTAAAACTCTAAGGCATCGATGTCT 5679834 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || | || || || || || || ||||| || ||| Sbjct 5679835 CCATATAACTCCTCCAGCTCAGCTGCCATCTCCTTGTCCCCT 5679876 Score = 105 bits (116), Expect = 9e-18 Identities = 109/141 (77%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || ||||||||||| |||| | || |||||| | || || || ||| | |||| Sbjct 5689425 GTACTTACCCCATGGCCCAAGGCCTTGGTGAAGCCTGGACCCATCTTGCCGGA--AGTCT 5689482 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 |||| |||||||||||||||||||| |||| ||||||||||| | ||| ||||| |||| Sbjct 5689483 TAAAGAACTGGTGCGTGAAATGTTGTGCAAAGAAGGCAAACATGAGGTTTGTGCCTTGGG 5689542 Query 10144 GATCGGGAGTGAAGGTCCTCC 10164 |||| || |||| |||||| Sbjct 5689543 GATCAGGGATGAATTTCCTCC 5689563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708499656226160