Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12 176 7e-40 seq82 149 1e-31 >seq12 Length=33761702 Score = 176 bits (194), Expect = 7e-40 Identities = 195/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||||| | | ||||||||||| || || ||||| ||||| || || Sbjct 899568 GCTAAGCGCCATCGCAAGGTTTTGCGAGATAACATTCAGGGCATCACAAAGCCGGCAATT 899509 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| |||||||| ||||| || |||| || | |||| || |||| Sbjct 899508 CGGCGTCTCGCTCGCCGTGGTGGCGTCAAACGGATCTCCGGCCTCATCTACGAGGAGACG 899449 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||| |||| ||| ||| || ||| |||||| Sbjct 899448 CGAGGTGTACTGAAGGTGTTCCTGGAGAACGTCATCCGTGACGCTGTCACCTACACCGAG 899389 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || ||||| ||||| ||||||| | ||||| || | ||||| |||||| Sbjct 899388 CACGCTAAGCGCAAGACGGTCACTGCCATGGACGTGGTCTACGCGCTCAAACGCCAAGGC 899329 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 899328 CGCACTCTGTATGGCTTTGG 899309 Score = 120 bits (132), Expect = 5e-23 Identities = 183/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | | || || |||||||| || || || ||||| || || Sbjct 11517512 CGCCAAGCGCCACCGCAAGGTTTTGCGGGACAACATCCAGGGCATTACAAAGCCTGCGAT 11517453 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || || || || |||||||| |||| || || | || || |||| Sbjct 11517452 CCGCCGTCTCGCCCGCCGAGGGGGCGTCAAGCGCATCTCCGGGCTGATTTACGAGGAGAC 11517393 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || | ||| ||||| Sbjct 11517392 CCGGGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTGACCTACACCGA 11517333 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || |||| || || || Sbjct 11517332 GCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTGTACGCGCTGAAGCGCCAGGG 11517273 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 11517272 CCGCACGCTGTACGGCTTCGG 11517252 >seq82 Length=9913820 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | ||||| || |||||||| || ||||||||||| |||||| Sbjct 773574 GCTAAGCGCCATCGTAAGGTGCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATC 773633 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 773634 CGTCGACTGGCCCGGCGCGGCGGTGTCAAGCGCATCTCCGGCCTTATCTACGAGGAGACG 773693 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| ||| || || ||| || ||| Sbjct 773694 CGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTAATCCGTGACGCCGTCACCTACACGGAG 773753 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 773754 CACGCCAAGCGCAAGACAGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGA 773813 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 773814 CGCACGCTCTACGGCTTCGG 773833 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || ||||||||||| || |||||||| || || || Sbjct 811677 CGCCAAGCGCCACCGCAAGGTACTGCGCGATAACATCCAGGGCATCACCAAACCCGCCAT 811618 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 811617 CCGCCGCCTGGCTCGCCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 811558 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 811557 GCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 811498 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || ||||| || Sbjct 811497 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGTCAGGG 811438 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 811437 ACGCACGCTCTACGGCTTCGG 811417 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || ||||||||||| || ||||||||||| || || Sbjct 828390 CGCCAAGCGCCACCGCAAGGTACTGCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 828331 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 828330 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGAC 828271 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 828270 GCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 828211 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 828210 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 828151 Query 16672 CCG 16674 || Sbjct 828150 ACG 828148 Score = 129 bits (142), Expect = 9e-26 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 988324 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGCCTGGCTCGCCGCGGC 988383 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| || | || ||||| | ||| Sbjct 988384 GGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACGCGCGGGGTGCTGAAGGTGTTC 988443 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || || || |||||||| || || ||||| ||| Sbjct 988444 CTGGAGAACGTGATCCGCGACGCCGTCACTTACACGGAGCACGCCAAGCGCAAGACGGTC 988503 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | ||||| || | || || || || || | | | || ||||| || Sbjct 988504 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGACGCACGCTCTACGGTTTCGG 988562 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||| || || || Sbjct 992952 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGCTTGGCGCGGCGCGGC 992893 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| ||||||| | |||| || |||| || | || ||||| | ||| Sbjct 992892 GGCGTCAAGCGCATCTCTGGTCTCATCTACGAGGAGACGCGCGGGGTGCTGAAGGTGTTC 992833 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || || ||||| ||| Sbjct 992832 CTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACGGTC 992773 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | ||||| || | || || || || || | | | || || || || Sbjct 992772 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGACGCACGCTCTACGGCTTCGG 992714 Score = 120 bits (132), Expect = 5e-23 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||||| || || Sbjct 928989 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGCTTGGCTCGGCGCGGC 928930 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | | || || |||| || | || ||||| | ||| Sbjct 928929 GGCGTCAAGCGCATCTCCGGTCTCATTTACGAGGAGACGCGCGGGGTGCTGAAGGTGTTC 928870 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || || ||||| ||| Sbjct 928869 CTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACGGTC 928810 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | ||||| || | || || || || || | | | || || || || Sbjct 928809 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGACGCACGCTCTACGGCTTCGG 928751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072604282427