Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq86 120 4e-22 seq13 116 5e-21 seq59 109 7e-19 >seq86 Length=9768497 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| |||||||||||||| ||||| || ||||| || || || || | Sbjct 5480121 CCTCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCT 5480062 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || || || || || |||||||||||||| ||||| || || ||||||| Sbjct 5480061 TGAGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGG 5480002 Query 33446 C 33446 | Sbjct 5480001 C 5480001 >seq13 Length=33879094 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || || ||||| || ||||| | Sbjct 19896919 ACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTGTAAGGTTCAATG 19896860 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | | | Sbjct 19896859 GACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGAAGA 19896800 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 19896799 CTGTTTCTTATACCATA 19896783 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || ||||| |||| | Sbjct 19876774 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACG 19876715 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | |||||| ||| | | || || ||||||| Sbjct 19876714 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGAAACTCAAAGATGTCTAAATGCCA 19876655 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 19876654 AGGCTCCAGGTAAATAGC 19876637 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63456 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63515 || ||||| ||| | || |||||| ||| | | | ||| |||||||| || |||| Sbjct 19872982 ATGTAGCTGCCAGTAGCCCGAATACAACTCACAGCGACACCAATTCCCCCAGCAGATTTA 19872923 Query 63516 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATG 63575 || || ||||| || | || | ||||||||||| || || ||||| ||||| |||| Sbjct 19872922 GAAATCAATGCACACTGCTTCAGAGTGTCATAGATGCCTTCAATGCTGTCATCTTTCATA 19872863 Query 63576 TTAAGTAGAAAACAGCTAGA 63595 | || || ||||||||||| Sbjct 19872862 CTCAGAAGGAAACAGCTAGA 19872843 >seq59 Length=15337887 Score = 109 bits (120), Expect = 7e-19 Identities = 160/225 (71%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATT-CCGTC 33710 || ||||| || |||||| | |||| ||||| ||||||| ||||| |||||| || || Sbjct 10657403 TCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCATC 10657462 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 ||||| ||||| || |||| | || |||||| ||| | || || || | || Sbjct 10657463 GCTGGCAGCAAAGAAAGCCAGAATGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGGGC 10657522 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 | ||| | | || ||||| || | |||||| || ||| | ||||||||||| ||||| Sbjct 10657523 TTCCCAGTGCTGAATGTCTTTGGAAAGATCTACCTCCTCCGCCGTCCAAAATGAGGCCTC 10657582 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAA 33875 || || ||| ||| || ||| |||| | |||| || ||||| Sbjct 10657583 GGCTTTCTTACACACGTGCCACATGTGGTGGTATTCCATAGGGAA 10657627 Score = 105 bits (116), Expect = 8e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATT-CCGTC 33710 || ||||| || |||||| | |||| ||||| ||||||| ||||| |||||| || || Sbjct 9879557 TCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCATC 9879616 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 ||||| ||||| || |||| || || |||||| ||| | || || || | || | Sbjct 9879617 GCTGGCAGCAAAGAAAGCCAGAACGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGGGT 9879676 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 | ||| | | || |||| || | |||||| || ||| | ||||||||||| ||||| Sbjct 9879677 -TCCCAGTGCTGAATGGCTTTGGAAAGATCTACCTCATCCGCGGTCCAAAATGAGGCCTC 9879735 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAA 33875 || || ||| ||| | ||| |||| | |||| || ||||| Sbjct 9879736 GGCTTTCTTACACACATGCCAAGTGTCGTGGTATTCCATAGGGAA 9879780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622925093161240