Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq13 100 7e-16 seq86 84.2 6e-11 >seq13 Length=33879094 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| | || |||| ||||||||| || || |||| ||||| || || || || ||| Sbjct 19878183 GCTCAGCAACTTTGGTATGCCATCATTGAGTCCCAGACAGAGACGGGTACCCCGTACATG 19878242 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| ||||| || ||| |||||| ||| |||| || ||||| | Sbjct 19878243 CTCTACAAAGATTCCTGCAATCGGAAGAGCAACCAACAGAACCTGGGAACAATCAAATGC 19878302 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || ||||| | ||||| ||| Sbjct 19878303 AGCAACCTGTGCACAGAGATAGTAGAATATACC 19878335 Score = 86.0 bits (94), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| || || ||||||||||| || | Sbjct 19876628 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGACATCTTTGAGTTTCTCGATTTA 19876687 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| ||||| || || |||||| | ||||| |||| ||| |||||| || Sbjct 19876688 AAGAAGAACACAGGAAAGGAAGAGCAGCGTGCCAGGGATCTTTTCTTTGCCCTTTGGATT 19876747 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || |||||| Sbjct 19876748 CCAGATCTCTTCATGAAACGAGTGGAG 19876774 >seq86 Length=9768497 Score = 84.2 bits (92), Expect = 6e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||| | ||| |||||||| ||||||||||| | ||| ||||||| ||||| Sbjct 5480001 GCCTTTGCCGCGGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATCTTCTGGCTC 5480060 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || ||||| | | | ||||| || || || ||||| || || | |||||| |||| ||| Sbjct 5480061 AAGAAACGGGGACTCATGCCTGGCCTCACCTTTTCCAACGAACTCATTAGCAGAGACGAG 5480120 Query 22621 G 22621 | Sbjct 5480121 G 5480121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303306190920098