Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq20 113 3e-20 seq102 107 1e-18 seq5 89.7 3e-13 seq15 87.8 1e-12 seq48 82.4 5e-11 >seq20 Length=30177268 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||| |||||||||||||||||| |||||||| ||||| || ||||| || Sbjct 5531825 AAGCCCGTTCTCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTTGT 5531766 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| | |||||||||||||||||||||||||| Sbjct 5531765 TCATCCATGCATGCGCGTCACTAATTAGATGACGA 5531731 >seq102 Length=8225135 Score = 107 bits (118), Expect = 1e-18 Identities = 80/94 (85%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGTT 25957 |||||||||||||||||||||||||||| |||||||| | | | || ||||||||| Sbjct 6147930 AGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTGGCGACAGTGGAAATCTCGTT 6147871 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||| |||||||||||||||||| || Sbjct 6147870 CATCCATTCATGTGCGTCACTAATTAGATGATGA 6147837 >seq5 Length=43145420 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||| |||||| |||| ||||||| |||||||||||| Sbjct 7639759 CTCTCTCTTCAAAGTTCTTTTCAACCTTCCCTTACGGCACTTGTTGACTATCGGTCTCGT 7639818 Query 20007 GGTAATATTTAGCCTTA 20023 | |||| ||||||| Sbjct 7639819 GCCGGTATTCAGCCTTA 7639835 >seq15 Length=31830809 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||||| | |||||||||| |||||||||||| ||||||||||||||| || | | | Sbjct 647118 CAACAGAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACATCCATT 647177 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || || || || || | ||| ||||| | || | |||||| || || Sbjct 647178 TTCCAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATGCCTTCCTTATC 647237 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||| ||| |||||| || | | || || Sbjct 647238 CTGGATCTTGGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACCTCGAGCATGATGGT 647297 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGC 38315 || |||| | |||||| || || || ||| Sbjct 647298 CTTCCCCGAGAGGGTTTTTACAAAAATGTGC 647328 >seq48 Length=18100587 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 19951 CTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTA 20010 ||| || ||||||||||||||||||||| |||||||||||| |||||||||||| | Sbjct 16174901 CTCCTCCAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGGGCCG 16174960 Query 20011 ATATTTAGCCTTA 20023 ||||||||||| Sbjct 16174961 GGATTTAGCCTTA 16174973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334935610722209