Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq86 86.0 7e-12 seq59 86.0 7e-12 >seq86 Length=9768497 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 ||||| |||||||||||||| || ||||| |||||| ||||||||| || || |||||| Sbjct 5480074 AGTCCCCGTTTCTTGAGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCC 5480015 Query 93221 ACGGCTGCAAATGCCAC 93237 || || ||||| ||||| Sbjct 5480014 ACCGCGGCAAAGGCCAC 5479998 >seq59 Length=15337887 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTA-TACCA 93499 |||| || || || |||||||| |||| || || | ||| |||||||||| | ||| Sbjct 10657401 CTTCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCA 10657460 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 ||| || ||||| ||||||| || ||| |||||| | | |||| || || || Sbjct 10657461 TCGCTGGCAGCAAAGAAAGCCAGAATGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGG 10657520 Query 93560 TTATCCCAAT-CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 ||||| | | || | ||||| |||||||| || || || | |||||||| || || Sbjct 10657521 GCTTCCCAGTGCTGA-ATGTCTTTGGAAAGATCTACCTCCTCCGCCGTCCAAAATGAGGC 10657579 Query 93619 TTCTGCTTTTTTGTACATATCCCATATGTCTTGATATT 93656 || ||||| || ||| | ||| |||| || |||| Sbjct 10657580 CTCGGCTTTCTTACACACGTGCCACATGTGGTGGTATT 10657617 Score = 82.4 bits (90), Expect = 9e-11 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTA-TACCA 93499 |||| || || || |||||||| |||| || || | ||| |||||||||| | ||| Sbjct 9879555 CTTCTGTAATTTGAACTTCTTGGCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCA 9879614 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 ||| || ||||| ||||||| | ||| |||||| | | |||| || || || Sbjct 9879615 TCGCTGGCAGCAAAGAAAGCCAGAACGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGG 9879674 Query 93560 TTATCCCAAT-CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 | ||||| | | || | |||| |||||||| || || || | |||||||| || || Sbjct 9879675 GT-TCCCAGTGCTGA-ATGGCTTTGGAAAGATCTACCTCATCCGCGGTCCAAAATGAGGC 9879732 Query 93619 TTCTGCTTTTTTGTACATATCCCATATGTCTTGATATT 93656 || ||||| || ||| || ||| |||| || |||| Sbjct 9879733 CTCGGCTTTCTTACACACATGCCAAGTGTCGTGGTATT 9879770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556841038402360