Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq118 156 8e-33 seq54 141 2e-28 seq12 131 3e-25 seq15 120 6e-22 seq66 104 4e-17 seq2 104 4e-17 seq41 86.0 1e-11 >seq118 Length=4884071 Score = 156 bits (172), Expect = 8e-33 Identities = 175/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||||||| |||| ||| || ||| | | || |||||||| || || || Sbjct 2270136 CCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGTTCACCTTCTGGATGTTGTAGTCAGAC 2270195 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| | ||| || || || || || ||||| || || Sbjct 2270196 AGGGTACGCCCATCTTCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2270255 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTG---CTGAT-TC 68410 ||||| ||||||||||| ||||| |||||||| ||| ||||| || ||||| || Sbjct 2270256 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAGTGGTGGGTGTCACTGATCTC 2270315 Query 68411 TACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | ||||||||| || || ||||||||||| | ||| ||||||||| Sbjct 2270316 CACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCATGAAGATCTGCATT 2270367 >seq54 Length=16718083 Score = 141 bits (156), Expect = 2e-28 Identities = 169/228 (74%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||||| | ||| ||| || ||||||||||| |||||||| || || || Sbjct 7272815 CCTCCCCTAAGGCACCGGGCCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7272756 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || ||||||| | | |||||| | ||| || || || || || |||||||| ||| Sbjct 7272755 AGGGTGTGCCCATCTACCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCGGG-GGA 7272697 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||| | |||||| |||| ||||| ||||||| | ||| |||||||| | || || Sbjct 7272696 ATGACCTCCTTGCCTTGGATCTTGGCCTTGATGTTCTCAATGGTGTCACTAGGCTCCACC 7272637 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| |||| || | | |||||||||| | ||| ||||||||| Sbjct 7272636 TCAAGAGTGTTGGTCTTACTCATGAGGGTCTTCATGAAGATCTGCATT 7272589 >seq12 Length=33761702 Score = 131 bits (144), Expect = 3e-25 Identities = 150/197 (76%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 68267 GGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGC 68326 |||||||| |||||||||| || || || || ||||||||||| |||||| | ||| Sbjct 23446830 GGACTCTT---GGATGTTATAGTCAGACAGGGTATGCCCATCTTCTAGCTGCTTGCTGGC 23446774 Query 68327 GAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 || || || | | |||||||| || |||||||||||||||| ||||| |||||||| Sbjct 23446773 AAAGATAAGCCCCCGCTGGTCGGGGAGA-TGCCTTCCTTGTCTTGGATCTTGGCCTTGAC 23446715 Query 68387 GGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCT 68445 ||| |||||| |||| | ||| | || | ||||||||| || || | |||||||| Sbjct 23446714 ATTCTCAGTGGTGT-TGCTGGGCTCTGCCTCAAGGGTGATGGTCTTACCAGAGAGGGTCT 23446656 Query 68446 TGACGAATATCTGCATT 68462 | ||||| ||| |||| Sbjct 23446655 TCACGAAGATCCACATT 23446639 >seq15 Length=31830809 Score = 120 bits (132), Expect = 6e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| ||||| ||||| ||||| || | || | |||| ||| | ||| Sbjct 647128 TGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACATCCATTTTCCAGTTGC 647187 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || || ||||| || || || |||||||||||||| || || ||||| Sbjct 647188 TTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTG 647247 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| || | || ||||||| | ||| || || | ||||||| || |||| | Sbjct 647248 GCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACCTCGAGCATGATGGTCTTCCCCGAG 647307 Query 68439 AGGGTCTTGACGAATATCTGC 68459 ||||| || || || || ||| Sbjct 647308 AGGGTTTTTACAAAAATGTGC 647328 >seq66 Length=13365902 Score = 104 bits (114), Expect = 4e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| ||||||||||| || || || || | |||||||| Sbjct 1687876 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCAGAAAGAGTGCGGCCATCTTCC 1687817 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTC 68362 | |||||| || ||||| ||||| || || ||||| || || |||||||| Sbjct 1687816 AGCTGCTTGCCCGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTC 1687767 >seq2 Length=58787292 Score = 104 bits (114), Expect = 4e-17 Identities = 115/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | |||| || |||| | | || |||||||| || |||||||| || || || Sbjct 1920368 CCTCCCCTCAGGCACAGGACCAGGGGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1920427 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | || || |||||| || | || || || || || || || Sbjct 1920428 AGGGTGCACCCATCTTCCAGCTCCT-CCCGGCAAAGACCAGCCTCTGCTGCTCAGGGGGT 1920486 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 ||||| ||||||||||| ||||| |||||||| Sbjct 1920487 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC 1920518 >seq41 Length=19891910 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 84451 AGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 84510 ||||||||||| |||||||||||| ||||| || ||||||| || ||||||||||| Sbjct 14194913 AGAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 14194854 Query 84511 CGAGCCCCACATCGGGC 84527 |||||||||| | |||| Sbjct 14194853 CGAGCCCCACGTTGGGC 14194837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921589693925080