Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq15 105 6e-18 seq13 84.2 2e-11 >seq15 Length=31830809 Score = 105 bits (116), Expect = 6e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| | | ||| | || || || ||||||||||||||||| Sbjct 647103 ACCACCACGGAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGA 647162 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| || ||| ||||| ||||||||| |||| || | || || || ||||| Sbjct 647163 CAAAGTACATCCATTTTCCAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGG 647222 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||||||| || || ||||| |||| | || | ||||| | || ||| || Sbjct 647223 AATGCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAAC 647282 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 114380 || | | | || || || | || |||||||||||||| ||| Sbjct 647283 CTCGAGCATGATGGTCTTCCCCGAGAGGGTTTTTACAAAAATGTGC 647328 >seq13 Length=33879094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | | || || |||| |||||||||||| Sbjct 14752880 ACCACCACGGAGTCTCAACACAAGATGAAGGATGGACTCCTTTTAAATGTTGTAATCAGA 14752939 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| ||||| |||||||| |||| || | || || || |||| Sbjct 14752940 CAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCATTGCTGATCAGGAGC 14752999 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | | ||| | || ||| | Sbjct 14753000 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGAGTCCGAGGGTTCACC 14753059 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC-AAAAATCTGCATG 114383 | | | | || || || | || |||||||| ||||||||||||| Sbjct 14753060 CTTGAGCATGATGGTCTTTCCCAT-AGGGTTTTTACAAAAAATCTGCATG 14753108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420119863218468