Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq16 127 4e-24 seq86 105 1e-17 seq59 89.7 1e-12 >seq16 Length=31710007 Score = 127 bits (140), Expect = 4e-24 Identities = 112/137 (82%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| ||||| | || || ||||| | ||||||||||| |||||||| Sbjct 26962120 GGGGAGAGAGTGGTGGCCTTCGCGGCTGTGGAGGGTGTGTTCTTCTCGGGGGCCTTCGCG 26962061 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||||||||||||| ||| ||| ||| || ||||| || ||||||||||| ||||| || Sbjct 26962060 GCCATCTTCTGGCTGAAGAAGAGAGGCCTC-ATGCCGGGCCTCACCTTCTCCAACGAGCT 26962002 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||||||||||| Sbjct 26962001 CATCAGCAGGGACGAGG 26961985 >seq86 Length=9768497 Score = 105 bits (116), Expect = 1e-17 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| || || ||||||||||| || || | || || || ||||||| Sbjct 5479996 TGGTGGCCTTTGCCGCGGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATCTTCT 5480055 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| | | || | | ||||| || |||||||| || ||||||||||| ||||| Sbjct 5480056 GGCTCAAG-AAACGGGGACTCATGCCTGGCCTCACCTTTTCCAACGAACTCATTAGCAGA 5480114 Query 42825 GACGAGG 42831 ||||||| Sbjct 5480115 GACGAGG 5480121 >seq59 Length=15337887 Score = 89.7 bits (98), Expect = 1e-12 Identities = 190/280 (68%), Gaps = 13/280 (5%) Strand=Plus/Minus Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 ||| |||||| || |||| || ||| ||||||| || | || | | |||||||| Sbjct 10657211 GGTGGCCTTTGCCACCGTGGAAGGCGTCTTCTTTTCCATTTCTTTTGTGTGGATCTTCTG 10657152 Query 42767 GCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 ||||||| | || | ||||| | |||||||| || || |||||||| ||||| || Sbjct 10657151 GCTCAAGAAATGGGAACCCATGCC-GACCTCACCTTTTCCAATGAACTCATTAGCAGAGA 10657093 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 | ||| |||| | ||||| | | | | ||||| | ||||| |||| |||| Sbjct 10657092 GGGGGGCTTGCACTGCGACTTCTC-TACTTGATGTTCAAG---CACCTGGTGCACCAGCC 10657037 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCA---TCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 || | || || |||| || |||| ||| ||||| |||| || ||||||| Sbjct 10657036 CTTGGAGCAGAGGGTGAAGGAGATCACTGTCA-----GCCGTCAGGATCTAGCAGGAGTT 10656982 Query 42944 CCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC 42983 ||||||| || | |||||||| || ||| |||||| Sbjct 10656981 CCTCACGGAGGCCTTGCCCGTGAAGCTCACCGGGATGAAC 10656942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944305687762640