Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq15 100 7e-16 seq13 89.7 1e-12 >seq15 Length=31830809 Score = 100 bits (110), Expect = 7e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| | | ||||||| ||| || ||||| || || || || | Sbjct 647104 CCACCACGGAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGAC 647163 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| | ||| | ||| || || ||||||||||| | || ||| | || Sbjct 647164 AAAGTACATCCATTTTCCAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGA 647223 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||||||||| || || || || |||| ||||| || | ||| || Sbjct 647224 ATGCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACC 647283 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 |||||| |||| |||||||| | || || || || || || ||| Sbjct 647284 TCGAGCATGATGGTCTTCCCCGAGAGGGTTTTTACAAAAATGTGC 647328 >seq13 Length=33879094 Score = 89.7 bits (98), Expect = 1e-12 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| | || ||||||| || || |||| || || || || | Sbjct 14752881 CCACCACGGAGTCTCAACACAAGATGAAGGATGGACTCCTTTTAAATGTTGTAATCAGAC 14752940 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||||| | ||| || || || |||||||| | || ||| | | Sbjct 14752941 AAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCATTGCTGATCAGGAGCA 14753000 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || ||||||||||| || | ||| | Sbjct 14753001 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGAGTCCGAGGGTTCACCC 14753060 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC-GAATATCTGCAT 288473 | |||| |||| ||||| || | || || || || || |||||||| Sbjct 14753061 TTGAGCATGATGGTCTTTCCCAT-AGGGTTTTTACAAAAAATCTGCAT 14753107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179611490439842