Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq5 208 1e-48 >seq5 Length=43145420 Score = 208 bits (230), Expect = 1e-48 Identities = 223/295 (76%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 8881 GAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGT 8940 |||||| | | ||||| |||||||| ||| || ||||| |||||||||| ||||| Sbjct 25080062 GAACGCAGTGTAAGGACAGCCCTTCACGTTGTTGCAGATGAGAGACTGAATGGAGGCGGT 25080121 Query 8941 TTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGA 9000 || | ||| || ||||| ||||| ||||| || || || || |||||||| ||| || Sbjct 25080122 GTTGATGATCTCAAAACCCACGTCTCCGCCAAAAGTACTCGGCTTCCAGTAATGCGGCGA 25080181 Query 9001 GCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCT 9060 || ||| ||| ||||||| ||||||||||| || || || |||| ||| | ||| | Sbjct 25080182 ACATATGGGGTTACCCATGAGTCCTTTCAAGGAGAAGGGCGCGCCCATCTCCACCATGGT 25080241 Query 9061 CTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGAC 9120 ||||||||||||||| | || || || ||||| || | | ||| | || || || || Sbjct 25080242 CTCACCGAAGATGGCGTCTGGGCGAGGCTTTTCCACCAGAAGGCCGGGATACAGCTCCAC 25080301 Query 9121 AGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| |||||||||||||||| ||| ||||| || |||||||| ||| Sbjct 25080302 AGCATCAATGTCACCATAGAGGGCTTCCAGCTCTGCAGCCATTTCCTTCTCTCCT 25080356 Score = 109 bits (120), Expect = 8e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181 ||||||||||| |||| ||||| |||||||| || ||||| | ||| ||| | || Sbjct 25083022 CTTACCCCATGGCCCAGGCCTGTGGTGAAAGCTGGCCCTCGTTTCTGATCTGTCTTGAAG 25083081 Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241 || || || || ||||| || | || |||| |||||||| || ||||| ||||| || Sbjct 25083082 AACTGATGGGTGAAGTGCTGGGCAAAGAAAGTGAACATCATATTTGTGCCTTGGGGGTCA 25083141 Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATC-TGTGTTGAATCGGGCAGACG 10300 ||||| || |||| | | || ||| || |||| || | ||| ||||||| ||||| | Sbjct 25083142 GGGATGAACTTCCTTCTCAGAAGAACCTTTTCCAGAACCATGT-TTGAATCAGGCAGCTG 25083200 Query 10301 CGCCTTACCTGA 10312 | ||| ||||| Sbjct 25083201 CTTCTTCCCTGA 25083212 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 ||||| | || || || || || |||| || |||| || || ||||| || || || Sbjct 25081827 ATTAGCCTGGTTGTCTGGAATAAGCGCTCATCGTCCCACTCTGGATGTTCCTGCTTCAGC 25081886 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || ||||| || ||||| || || | |||||| ||||||||||||||||| | ||||||| Sbjct 25081887 ACGTCGCACACTCTGTTATGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGACCCGGC 25081946 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | ||||| | | | || || ||||| ||| | || || | | ||||| Sbjct 25081947 ACCAGGCCAAAGAGCTGCTGGCCTACAGCAAAACGCGCCTGCTCAGGGATGTGGGGCGGG 25082006 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || | ||| | | || || || || || ||||| || ||||| || || | ||| Sbjct 25082007 TAGATCATGTCTGCTTGAGTATCCTTAACTGTGGGAGGGTACATCTCTCCATGAAT 25082062 Score = 96.9 bits (106), Expect = 5e-15 Identities = 194/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || | ||||||||||| || ||| || | ||| || | | | || Sbjct 25081333 CCAGCAATTTGCTTGGTGAACGATTCCACAAATGTGGTAAGTCCATGTTCCACTAATATA 25081392 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || || | | ||||| | ||| | || |||| ||| Sbjct 25081393 GAGTTGTTGTAGAGAAACTGCTGAAAGTTATACTCCTGGTCATCGATCTGAAAGGTGTCA 25081452 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| ||| | ||||||| | ||||| || || ||||| | || || |||||||||||| Sbjct 25081453 GGCACCAGGGGATGCCAGTGATAGAGTGTGTTAAACTCAGAAGCAATGCGGTTCTGGTAC 25081512 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | || |||||||| | || | |||||| || |||| Sbjct 25081513 TGGAATTGTTGGT--TGAAGAGCAGTTCTGGGTCAAACTTCAGTTTGAAGTGATATCCGC 25081570 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | |||||| ||||| | | || | || ||||| ||||| || Sbjct 25081571 TCAATTGCTGTACATAGTCTTCAATCACGATCTTAATAGTTTCTCC 25081616 Score = 89.7 bits (98), Expect = 7e-13 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 10865 TAAAACCCCGTCCGCGTACAATCGCACCAATAACGATCAAACCCCACCGTCATGCATACC 10924 || || || ||||| || || |||||| || || ||||| || || ||||||||| || Sbjct 26493792 TAGAAGCCGGTCCGGGTGCAGTCGCACTTGTAGCGGTCAAAGCCTACGGTCATGCATTCC 26493851 Query 10925 CCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTTGGCTGCAATTTAAAAG 10975 ||||| || || ||||||| ||||||||||| |||||| ||| |||||| Sbjct 26493852 CCTCGGTTTTGACACGGGTTGGAACAGCAAGGATTGGCTACAA--TAAAAG 26493900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723702316702600