Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 7e-14 seq16 84.2 3e-11 >seq13 Length=33879094 Score = 93.3 bits (102), Expect = 7e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | |||||| | ||||||| ||| || || || || | Sbjct 19903227 CCTGCTTCCAACCATAGAAGTGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATAT 19903168 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||||| |||||||||||| || ||||||| | ||||| || ||||| |||| || Sbjct 19903167 GGATGTTCAAAGACTGGCTTTGATCAATGAAAGCACCTCGATCAGCTGCCATCTTGAGAA 19903108 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 || ||||| || || ||||| |||||||| Sbjct 19903107 CAGTTTTCTGAGAGATTTCCCATACCGTCTT 19903077 >seq16 Length=31710007 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||||| ||||| ||||||||| | | ||||||||||||||| || | | | Sbjct 26961985 CCTCGTCCCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCTCTCTTCT 26962044 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 | ||||| || |||||||| || || || || || | |||||||| ||||| || | Sbjct 26962045 TCAGCCAGAAGATGGCCGCGAAGGCCCCCGAGAAGAACACACCCTCCACAGCCGCGAAGG 26962104 Query 160065 CCACGAGCCTCTCACC 160080 |||| | ||||| || Sbjct 26962105 CCACCACTCTCTCCCC 26962120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795126981929840