Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq15 141 2e-28 seq13 113 1e-19 seq66 96.9 8e-15 seq115 93.3 1e-13 seq54 89.7 1e-12 seq118 86.0 1e-11 >seq15 Length=31830809 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||||| | ||| || ||||| ||||||||||| | |||||| |||| |||||| Sbjct 647110 CGGAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTA 647169 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||||| ||||| || |||||||| || | ||||| || ||| ||| ||| Sbjct 647170 CATCCATTTTCCAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATGCCT 647229 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || || | ||||||| | ||| || || | | Sbjct 647230 TCCTTATCCTGGATCTTGGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACCTCGAGC 647289 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||||| |||| ||| ||||| |||||||| || Sbjct 647290 ATGATGGTCTTCCCCGAGAGGGTTTTTACAAAAATGTG 647327 >seq13 Length=33879094 Score = 113 bits (124), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||||| ||||| || || | |||||||||| | |||||| |||| |||||| Sbjct 14752887 CGGAGTCTCAACACAAGATGAAGGATGGACTCCTTTTAAATGTTGTAATCAGACAAAGTA 14752946 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| ||||| || || ||||| || | ||||| || ||| ||||||| Sbjct 14752947 CATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCATTGCTGATCAGGAGCAATTCCT 14753006 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | | ||| | | ||| | | | | Sbjct 14753007 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGAGTCCGAGGGTTCACCCTTGAGC 14753066 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAA 199622 |||| ||||| ||| | || ||||| ||||||| Sbjct 14753067 ATGATGGTCTTTCCCAT-AGGGTTTTTACAAAAA 14753099 >seq66 Length=13365902 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| ||||| || |||| ||| ||||||| | ||| | |||||| Sbjct 1687879 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCAGAAAGAGTGCGGCCATCT 1687820 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| || ||||||||||| | ||||||||| || Sbjct 1687819 TCCAGCTGCTTGCCCGCGAAGATGAGCCTCTGCTGGTCAGG 1687779 >seq115 Length=5499404 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||| ||| | || || || ||||||||||| | |||||| |||| |||||| | Sbjct 2584482 AGTCTCAACACAGGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTATGT 2584541 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||| ||| ||||| || || ||||| |||| ||||| || ||| |||||| || Sbjct 2584542 CCATCTTTCAGGTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCCTC 2584600 >seq54 Length=16718083 Score = 89.7 bits (98), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||| | | || | ||||| || || ||||| || |||| ||||||||||| || || Sbjct 7272807 AAGGCACCGGGCCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTG 7272748 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||| |||||||||| | ||| ||||| || | ||||||||| || || ||| | Sbjct 7272747 CCCATCTACCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCGGGGGAATGACCTCC 7272688 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 | || | || ||||| ||| | | || | |||||| | | || || || | || Sbjct 7272687 TTGC-CTTGGATCTTGGCCTTGATGTTCTCAATGGTGTCACTAGGCTCCACCTCAAGAGT 7272629 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATT-TTAGCCTT 199641 | | ||||||| | |||| || |||| || || || |||| |||| ||| Sbjct 7272628 GTTGGTCTTACTCATGAGGGTCTTCATGAAGATCTG---CATTGTTAGGCTT 7272580 >seq118 Length=4884071 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/206 (69%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || | |||| |||| ||||||||||| || || | ||||| Sbjct 2270150 CAGGACCAGGTGCAGGGTGTTCACCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATC 2270209 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| | ||| ||||| || | ||||||||| || || || || || Sbjct 2270210 TTCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 2270269 Query 199537 CTGAATCTTTTGCTTCACGGATTC------GACGGTGTCTGTTGTTTCTACATCCAACGT 199590 || ||||| ||| || |||| | |||||| | | || || || | || Sbjct 2270270 TTGGATCTTGGCCTTGAC--ATTCTCAGTGGTGGGTGTCACTGATCTCCACCTCGAGGGT 2270327 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCA 199616 ||| ||||| || ||||| || |||| Sbjct 2270328 GATGGTCTTGCCAGTGAGGGTCTTCA 2270353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178878717095213