Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq54 86.0 7e-12 >seq54 Length=16718083 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 46386 CCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGA 46445 |||| |||| || ||| || ||||| |||||||| || || ||| || | || | | Sbjct 7272796 CCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATCTACCA 7272737 Query 46446 GCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGA 46505 ||||||||| ||| || |||| | ||||||||||| || | | ||||||| | || Sbjct 7272736 GCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCGG-GGGAATGACCTCCTTGCCTTGGA 7272678 Query 46506 TCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGC 46565 |||| ||||| || | | ||||| || | ||||| || | ||| |||| || | Sbjct 7272677 TCTTGGCCTTGATGTTCTCAATGGTGTCACTAGGCTCCACCTCAAGAGTGTTGGTCTTAC 7272618 Query 46566 CCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | | || || || | ||||| |||||| Sbjct 7272617 TCATGAGGGTCTTCATGAAGATCTGCATT 7272589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565218341102280