Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq118 105 7e-18 seq86 102 8e-17 seq16 102 8e-17 seq59 96.9 3e-15 >seq118 Length=4884071 Score = 105 bits (116), Expect = 7e-18 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||| | || || ||||| ||||| ||||||||| |||| || ||| || Sbjct 2270367 AATGCAGATCTTCATGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGATCAG 2270308 Query 38303 CGACAGCGTGCA-----AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 |||| | || || | | || | || |||| ||||| ||||| || ||| | Sbjct 2270307 TGACACCCACCACTGAGAATG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCA 2270249 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||| ||| |||| || | || |||| |||||||| || | ||| ||||| ||| Sbjct 2270248 GACCAGCAGAGGCTGATCTTTGCCAGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGAC 2270189 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| |||| || ||||| |||| ||||| |||| || || Sbjct 2270188 TACAACATCCAGAAGGTGAACACCCTGCACCTGGTCCTGCGCCTGAGGGGAGG 2270136 >seq86 Length=9768497 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||||||||||| || || | ||| |||||||| || ||||| | Sbjct 5480121 CCTCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCT 5480062 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| || || | || ||| || |||||||||| ||| || || || || || | Sbjct 5480061 TGAGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGG 5480002 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| |||||| || Sbjct 5480001 CCACCACGCGCTCTCC 5479986 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 |||||||||| | |||||||| |||||||||||||| || ||||| ||| ||||| Sbjct 5477968 CACCTCCTCGGCCGTCCAAAATGACGCCTCGGCTTTCTTATACATCTGCCAAATGTCGTG 5477909 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 |||| || || || | || || || |||||||| || | || |||||| ||| Sbjct 5477908 GTATTCGATAGGGAAGACGACGAAGCGCCGGGGGTTCTCTCTCAGCAGCGGTTCC 5477854 >seq16 Length=31710007 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||||||| ||||| |||||| ||| || | ||| ||||||||||| | || | Sbjct 26961985 CCTCGTCCCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCTCTCTTCT 26962044 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||| ||||| ||||| ||||| || ||||| || |||||||| | Sbjct 26962045 TCAGCCAGAAGATGGCCGCGAAGGCCCCCGAGAAGAACACACCCTCCACAGCCGCGAAGG 26962104 Query 133037 CCACCA 133042 |||||| Sbjct 26962105 CCACCA 26962110 >seq59 Length=15337887 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 132871 TGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAA 132930 |||||||||||||||||||||||| | | |||| ||||||||||||| |||| ||| | Sbjct 9878890 TGCACCAAATGCTTGAACATCAAGTA-GATAAGTTGCAATGCAAGCCCCCGTCTCTGCTA 9878948 Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 |||||||| || || || | | | ||||||| || | ||| |||||||| || || Sbjct 9878949 ATGAGTTCACTGGAAAAGGTGAGGTC-AGCATGAGTCCCCATTTCTTGAGCCAGAAGATC 9879007 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 | ||| | ||||| |||||||| || ||| || || | ||||| Sbjct 9879008 CACACAAAAGAACTGGAAAAAAAGACGCCTTCCACGATGGCAAAGGACACCA 9879059 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 132865 GGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCC 132924 ||| | ||||||| ||||||||||||||| | | |||||||| ||||||||| | || Sbjct 10657037 GGCTGGTGCACCAGGTGCTTGAACATCAAGTA-GAGAAGTCGCAGTGCAAGCCCCCCTCT 10657095 Query 132925 CTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAA 132984 ||| ||||||||| ||| || || | | ||| |||| | | | ||| |||||||| Sbjct 10657096 CTGCTAATGAGTTCATTGGAAAAGGTGAGGTCGG-CATGGGTTCCCATTTCTTGAGCCAG 10657154 Query 132985 AATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041 || || | ||| |||||||||||||| || |||| || || |||||| Sbjct 10657155 AAGATCCACACAAAAGAAATGGAAAAGAAGACGCCTTCCACGGTGGCAAAGGCCACC 10657211 Score = 91.5 bits (100), Expect = 1e-13 Identities = 173/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 133255 TGCACTTCTTGAGCGAAACGCT-CGACCAGATTTTCGTTGACGAT-GCCGTCGCTGGCGG 133312 || |||||||| || ||| | | | |||| ||| || ||||| || ||| |||||||| | Sbjct 10657412 TGAACTTCTTG-GCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCATCGCTGGCAG 10657470 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGT 133372 | || || ||||| | |||| || || | | ||| | | |||| | ||||||| Sbjct 10657471 CAAAGAAAGCCAGAATGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGT 10657530 Query 133373 CGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTT 133432 | |||| ||||| || || |||||||| | |||||||| || ||||||||||| | Sbjct 10657531 GCTGAATGTCTTTGGAAAGATCTACCTCCTCCGCCGTCCAAAATGAGGCCTCGGCTTTCT 10657590 Query 133433 TGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTT 133492 | ||| |||||||| |||| || || || | | | || |||||||| | Sbjct 10657591 TACACACGTGCCACATGTGGTGGTATTCCATAGGGAAGACGATGACCCTCCGGGGGTTCT 10657650 Query 133493 CGCGCAACAGC 133503 | | || |||| Sbjct 10657651 CTCTCAGCAGC 10657661 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133255 TGCACTTCTTGAGCGAAACGCT-CGACCAGATTTTCGTTGACGAT-GCCGTCGCTGGCGG 133312 || |||||||| || ||| | | | |||| ||| || ||||| || ||| |||||||| | Sbjct 9879566 TGAACTTCTTG-GCTAAATGGTTCCACCAAATTCTCATTGACTATTGCCATCGCTGGCAG 9879624 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGT 133372 | || || ||||| |||||| || || | | ||| | | |||| | | ||||||| Sbjct 9879625 CAAAGAAAGCCAGAACGTGCGATATAAAGTATCTCTCCTCGGGCTTCAGG-GTTCCCAGT 9879683 Query 133373 CGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTT 133432 | || | ||||| || || ||||| || |||||||||| || ||||||||||| | Sbjct 9879684 GCTGAATGGCTTTGGAAAGATCTACCTCATCCGCGGTCCAAAATGAGGCCTCGGCTTTCT 9879743 Query 133433 TGTACATACTCCACATGTC 133451 | ||| | ||| |||| Sbjct 9879744 TACACACATGCCAAGTGTC 9879762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500155050117760