Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq22 125 3e-23 seq1 123 1e-22 seq15 95.1 5e-14 seq13 89.7 2e-12 seq50 87.8 7e-12 seq61 84.2 9e-11 >seq22 Length=29017954 Score = 125 bits (138), Expect = 3e-23 Identities = 457/706 (65%), Gaps = 32/706 (5%) Strand=Plus/Plus Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977 |||| ||||||||||| ||||||| || ||||| ||||| | ||| ||||||| || | Sbjct 15738132 TTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAAGTGG 15738191 Query 450978 AAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATT 451037 | || || || ||||| | ||| ||||| ||||| | || ||| || || Sbjct 15738192 AGATAATTGCCAATGATAAGGGAAATCGAACCACTCCAAGTTAAGTCGCTTTCACTGACA 15738251 Query 451038 CAGAAAGACTTTTAGGGCAAGCTGCT--AAATCAA-TGGTAAATTCAAATGCCAAAAACA 451094 | || |||| |||| | ||||| ||||||| ||| || | || ||| |||| Sbjct 15738252 CCTAACGACTGATAGGAGATGCTGCAGAAAATCAAGTGGCAA---CGAACCCCACCAACA 15738308 Query 451095 CAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAG 451154 |||| |||||| || || | ||||| ||| | |||||||| |||| || || Sbjct 15738309 CAGTTGTTGATGCCAAGTGTCTGATTGGATGTAGATTTGATGATG---CTGT-CATCCAG 15738364 Query 451155 A--GAAAAAATTCTTTT---CTT-ATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 || | | | || ||| ||| || || ||| | ||| | |||| | ||| Sbjct 15738365 TCTGATATGAGGCATTGGCCCTTCATGGTG--GTGAATGATGCAGGCAGGCCCAAGGTTC 15738422 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 ||| | | || ||| | ||| | | | || | | || |||||| | | Sbjct 15738423 AAGCAGAATACAAAC----------AGCTTCTAC-CTAAAACAGGTGTCTTCTATGTTGC 15738471 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328 | || || ||||| |||| ||||| ||| |||| | ||||| |||| || Sbjct 15738472 TGACAAAGATGAAGGAAATTTCAGAAGCTTATCTTGGGAAGACTGTTACCAATGCTGTGG 15738531 Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 | ||||| || ||||| || ||||| | || | || ||||| ||||||| ||| | Sbjct 15738532 TGACTGTGCCAGCTTACTTTAATGACTCTCAGCATCAGGCAACCTAAGATGCTGGAACCA 15738591 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 || |||| | ||||| ||| ||||||| | ||| || ||||| ||| || | || |||| Sbjct 15738592 CTGATGGTCTTAATGTACTTAGAATTATCAGTGAGCCAACAGCTGCTACTATTGCTTATG 15738651 Query 451449 GACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAG 451508 | ||| ||| || | || |||| |||| | | | ||| |||| || || | Sbjct 15738652 GCTTAGACAAA---AAGGTTGGAGCTGAAAGAAATGTGCTGATTTTTTATTTAGGAGGTG 15738708 Query 451509 GAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCA 451568 | ||| |||| || | || | |||||||||||| | |||||||| || | | Sbjct 15738709 GCACTTTTGATGTGTCAATCCTCACTATTGAAGATGGGATCTTTGAAGTGAAATCTATAG 15738768 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGT 451614 ||| || || || |||| || ||| | |||| ||| ||| || Sbjct 15738769 CTGGAGACACCCACATAGGTGGAGAACGTTTTGACAATAGAATGGT 15738814 Score = 105 bits (116), Expect = 3e-17 Identities = 126/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 451967 GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026 |||||| || || ||||||| | || ||||| ||||||||||| |||||| | || ||| Sbjct 15739168 GGAAAAAAATTAAATAAGAGCATCAACCCTGAAGAAGCTGTTGCTTATGGTACAGCTGTT 15739227 Query 452027 CAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGATATTCTGTTAGTA 452083 || ||||| |||||| | || ||| | |||||| | |||| | ||| | Sbjct 15739228 CAGGCAGCCATTCTATCTGG---AGACAAGTCTGAAAATGTGCAAGATTTGCTGCCTTTG 15739284 Query 452084 GATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGAC 452133 |||||||| | ||| |||||||| ||||||| ||||||||| | ||||| Sbjct 15739285 GATGTAACTCTTCTTTCTCTTGGTATTGAAACTGCTGGTGGAGTCATGAC 15739334 >seq1 Length=63520090 Score = 123 bits (136), Expect = 1e-22 Identities = 457/703 (65%), Gaps = 26/703 (4%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| || ||||||||||| | ||| ||||||| Sbjct 47211928 GCAGTTGGCATTGATCTTGGCACCACCTACTCCTGTGTAGGTGTCTTCCAGCATGGAAAA 47211987 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || | || || | ||| | | | |||| ||||| | | | | ||| || Sbjct 47211988 GTGGAGAGAATTGCCAGTGATGGGGAAACT-GAACCACTCCAGCTTACATCACTTTCACT 47212046 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAAATCAATGGTAAATTCAAATG----CCAA 451089 || | ||| ||| | || | ||||| || |||| ||| | |||| ||| Sbjct 47212047 GACACCGAACAACTGATCGGAAATGCTGCAAA--CAAT--TAAGTGGCAATGAACCCCAC 47212102 Query 451090 AAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACA 451149 |||| ||| | |||||| || | | | |||| ||| | | ||||| | ||| || Sbjct 47212103 CAACATAGTTTTTGATGCCAAGCATCTGGTTGGATGTAGATTTAGTGATGCTGTTGTCCA 47212162 Query 451150 AAAAGAGAAAAA--ATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATA 451205 || | || ||| || ||| ||| | | || | ||| | |||| | Sbjct 47212163 GTCTGATATGAAGCATTGGCTCTTC--ATGGGGATG--AACGATGCAGGCAGGCCCAAGG 47212218 Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAA-CTTTTGCTCCTGAAGAAATTTCATCTATG 451264 |||||||| | ||||| || || || || | ||| | | || ||||| | || |||||| Sbjct 47212219 TTCAAGTAGAATATAAGGGAGAGACAAAGAGCTTCTAC-CCAGAAGAGGTGTCTTCTATG 47212277 Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 || || || || ||||| |||| || ||| ||| |||| | ||||| | | Sbjct 47212278 GTGCTGACAAAGATGAAGGAAATTGCTGAAGCTTATCTTGGGAAGACCGTTACCAGTACT 47212337 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 | | ||||| || | ||| || ||||| | || | || ||||| || ||||| ||| Sbjct 47212338 ATGGTGACTGTGCCAGTTTACTTTAATGACTCTCAGGGTCAGGCAACCAAGGATGCTGGA 47212397 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 ||||||||| | ||||| ||| || |||| | ||| || || || |||||| | || Sbjct 47212398 ACCATTGCTGGTCTTAATGTACTTAGAGTTATCAGTGAGCCAACGGCTGCTGCTATTGCT 47212457 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAA--GaaaaaaaTATTTTAGTATTTGATTTTG 451502 ||||| ||| ||| ||| ||||| |||| |||| | | | ||| |||| | Sbjct 47212458 TATGGCTTAGACAAA----AAGGT-CAGAACTGAAAGAAATGTGCTGATTTTTTATTTAG 47212512 Query 451503 GTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGG 451562 | || || ||| || | || | ||| | ||||||||||| | || |||| || Sbjct 47212513 GAGGTGGCACTTTTGGTGTGTCAATCCTTCCTATTGAAGATGGAATCTTCAAAGTGAAAT 47212572 Query 451563 CAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | | ||| || || || |||| || |||||| |||| || Sbjct 47212573 CTATAGCTGGGGACACCCAATTAGGTGGAGAAGATTTTGACAA 47212615 >seq15 Length=31830809 Score = 95.1 bits (104), Expect = 5e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 ||||| || ||||| || | || || || || | || || |||||| | || || | Sbjct 647324 ATTTTTGTAAAAACCCTCTCGGGGAAGACCATCATGCTCGAGGTTGAACCCTCAGACACT 647265 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 || || | | || || || || ||||||||||| |||||||||||||| ||| | Sbjct 647264 ATAAAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGCAAAGG 647205 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 | || ||| | || || ||||| ||| ||||| | |||||| | ||||| || ||| | Sbjct 647204 CTGATCTTCGCTGGTAAGCAACTGGAAAATGGATGTACTTTGTCTGATTACAACATTCAA 647145 Query 391236 AAGGATGCAACACTTCA 391252 ||||| | || ||||| Sbjct 647144 AAGGAGTCCACTCTTCA 647128 >seq13 Length=33879094 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || || ||||||||||||||| |||||||||| ||| | | || || | || || Sbjct 14753023 AAGATCCAGGATAAGGAAGGAATTGCTCCTGATCAGCAATGGCTGATCTTTGCTGGTAAG 14752964 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||||| ||||||||| | |||||| | ||||| || ||| | ||||| | | ||||| Sbjct 14752963 CAACTGGAAGATGGATGTACTTTGTCTGATTACAACATTTAAAAGGAGTCCATCCTTCAT 14752904 Query 391254 TTAGTATTAAGACT 391267 | || || ||||| Sbjct 14752903 CTTGTGTTGAGACT 14752890 >seq50 Length=18100965 Score = 87.8 bits (96), Expect = 7e-12 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||| ||| || || || ||||| ||| || | || | || | Sbjct 1524600 TGCAATCTCTGGCACTAAGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 1524657 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| | |||| | | Sbjct 1524658 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAAACCACTGTGATGTTAGACTATCGAGA 1524717 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| | ||| ||||| || ||| Sbjct 1524718 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCGTGTTATAAATGCAACCTTA 1524777 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATT 96262 || || || | || |||||| ||||||| |||| Sbjct 1524778 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAACGAATT 1524813 >seq61 Length=14742515 Score = 84.2 bits (92), Expect = 9e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 ||||| ||||||||||| ||||| || | || |||||||| ||||| || ||| | Sbjct 14725928 CCTGAGGAAATTTCATCCATGGTGCTGAGCAAGATGAAAGAGACAGCCGAGGCATACCTG 14725869 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || || || | | || || || || || || || ||||||||||| | || || Sbjct 14725868 GGCCAGCCTGTGAGGAACGCTGTGATCACGGTGCCTGCCTATTTCAATGACTCGCAGCGC 14725809 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || || || ||||| ||| || || || | ||||| || | || || || || Sbjct 14725808 CAGGCCACCAAGGATGCGGGAGCCATCGCGGGGCTCAATGTGCTCAGGATCATCAACGAG 14725749 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACT 451452 || || ||||| || || || ||||| || Sbjct 14725748 CCCACTGCAGCCGCCCTTGCCTATGGGCT 14725720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975646533860612