Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq15 131 4e-25 seq54 100 6e-16 seq66 91.5 3e-13 >seq15 Length=31830809 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||||||| | ||| |||||||||||||| |||||||| |||||||| | | ||| | Sbjct 647112 GAGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACA 647171 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||| ||| || |||||||| |||||||| || | ||| || || |||||||||||||| Sbjct 647172 TCCATTTTCCAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATGCCTTC 647231 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || ||| || || | || ||||| || ||| || || || | Sbjct 647232 CTTATCCTGGATCTTGGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACCTCGAGCAT 647291 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | ||||| || | | |||||||| || Sbjct 647292 GATGGTCTTCCCCGAGAGGGTTTTTACAAA 647321 >seq54 Length=16718083 Score = 100 bits (110), Expect = 6e-16 Identities = 123/167 (74%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| || ||||||||||| || || ||||| || | || || ||||||| | ||| Sbjct 7272794 AGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATCTACCAGC 7272735 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| | || ||||| || | || ||||| || |||||| | || ||| |||| || Sbjct 7272734 TGCTTGCTGGCAAAGATCAGCCTCTGCTGGTC-GGGGGAATGACCTCCTTGCCTTGGATC 7272676 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || ||||| ||||||||||||||| | ||||| ||||| || Sbjct 7272675 TTGGCCTTGATGTTCTCAATGGTGTCACTAGGCTCCACCTCAAGAGT 7272629 >seq66 Length=13365902 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||||| || || || || || | |||||| | |||||||| ||||| Sbjct 1687871 GTGCAGAGTGGACTCTTTCTGGATGTTATAGTCAGAAAGAGTGCGGCCATCTTCCAGCTG 1687812 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||| || |||||||| || | || ||||| || || |||||||| Sbjct 1687811 CTTGCCCGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTC 1687767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109441242953513