Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq118 107 1e-18 >seq118 Length=4884071 Score = 107 bits (118), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || |||| ||| | ||| | | ||||| ||||| ||||| || Sbjct 2270136 CCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGTTCACCTTCTGGATGTTGTAGTCAGAC 2270195 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || | |||||| || || | ||||||||| | || Sbjct 2270196 AGGGTACGCCCATCTTCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 2270255 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT-ATCGAT-----TCACCGGCC 34928 | ||||||||||| ||||| ||||| || || | | | |||| | | Sbjct 2270256 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCAGTGGTGGGTGTCACTGATC 2270313 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||| ||| ||||| || || ||||| ||||||| ||||||||||| Sbjct 2270314 TCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCATGAAGATCTGCAT 2270366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324622367575992