Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq86 98.7 1e-15 seq13 98.7 1e-15 >seq86 Length=9768497 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | ||| || ||||| || | |||||||| ||||| | ||| | Sbjct 5480121 CCTCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCT 5480062 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || || ||||| || ||||||||||| || ||||| || || ||||| | Sbjct 5480061 TGAGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGG 5480002 Query 19103 CAAC 19106 | || Sbjct 5480001 CCAC 5479998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAAT--TCATTACTCCCATT 18669 |||||| ||| ||||||||| |||||||||||| | | | | ||| |||||||| Sbjct 5481109 TTAAAAGTCAGCATCCAAAGTAAAAGAATTCTC--CGTGGGGCTGGACATAACTCCCATC 5481052 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| || || || || || | || ||| Sbjct 5481051 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAAATATTC 5480992 Query 18730 TCCATAAAATCAAATGGATTTT 18751 ||||| || || |||||||||| Sbjct 5480991 TCCATGAAGTCGAATGGATTTT 5480970 >seq13 Length=33879094 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| |||||||| || | ||| ||| |||| || | |||||| || | Sbjct 19903221 TCCAACCATAGAAGTGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 19903162 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || ||||||| |||||||||||| | | || | Sbjct 19903161 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCGATCAGCTGCCATCTTGAGAACAGTTT 19903102 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || |||||||| || ||||||| || || | ||| || || Sbjct 19903101 TCTGAGAGATTTCCCATACCGTCTTATAAAGCTGCTTCAGGTCCTCAGG 19903053 Score = 93.3 bits (102), Expect = 5e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || || || || || ||||| || || Sbjct 19896916 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTGTAAGGTTCAATGGAC 19896857 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG-CT 47446 |||||||| || || || ||||||||||| || |||||||| | |||| ||| ||| || Sbjct 19896856 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAA-TAAGAAGACT 19896798 Query 47447 ATTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 19896797 GTTTCTTATACCATA 19896783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562088852163960