Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq15 107 2e-18 seq115 89.7 4e-13 >seq15 Length=31830809 Score = 107 bits (118), Expect = 2e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || || ||||| || |||||||| | | ||| | ||| |||| ||| Sbjct 647127 ATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACATCCATTTTCCAGTTG 647186 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || |||| | || ||||| || ||||||||||| ||||| || || || Sbjct 647187 CTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTT 647246 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 |||||| ||| || |||||| || | ||| || || || ||| || || || | Sbjct 647247 GGCCTTTACATTTTTTATAGTGTCTGAGGGTTCAACCTCGAGCATGATGGTCTTCCCCGA 647306 Query 101446 TAAAGTTTTTACAAATATCTGC 101467 | ||||||||||| || ||| Sbjct 647307 GAGGGTTTTTACAAAAATGTGC 647328 >seq115 Length=5499404 Score = 89.7 bits (98), Expect = 4e-13 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || || ||||| || |||||||| | | ||| |||| | || || Sbjct 2584496 ATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTATGTCCATCTTTCAGGTG 2584555 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| |||| || || ||||| || ||||| || || |||||| || || Sbjct 2584556 CTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCCTCCTTATCTGGATCTTG 2584615 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||||||| ||||| ||||| | | ||| | || |||| || || | || Sbjct 2584616 GT-TTTTACATTTTCTGTTGTGTCCAAGGGTTCAGTCTTGAGCGTGATGGTCTTCTCAGT 2584674 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||||||||| ||||| || Sbjct 2584675 AAGGGTTTTTACAAAAATCTGGAT 2584698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396264688643523