Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq14 172 1e-37 seq123 136 7e-27 seq16 111 3e-19 seq13 100 5e-16 seq86 98.7 2e-15 seq63 95.1 2e-14 >seq14 Length=33208412 Score = 172 bits (190), Expect = 1e-37 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| |||||| || |||||||| || Sbjct 31877808 AGCAGCTGGCAGCCGTTGCTTACGTGGGTCATGACCTTCTGTTTCAGCTGGGCCACTTGC 31877749 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | ||||| |||||| || ||||| |||| ||| ||| |||||| Sbjct 31877748 TCCCGGAGCAGCCCGGCGGTGCTGGACAAGCCCGCGTTCTCAGCCTTCAGCGTCTTCACC 31877689 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| || ||||| ||| ||||| |||||||| |||| Sbjct 31877688 TTGTCCTCCAGGCGCGCGATGCGCTCTAGTTTCCGCTTCCGGCACTTGGTGGCCGCCAGT 31877629 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | || ||||| |||||||| ||||||| ||| || Sbjct 31877628 CGGTTCCGCAGCCGCTTGCGCTCCACTTTAATGCGCTCCTGGTCTTCCATGTTGATGGGG 31877569 Query 241625 GAC 241627 ||| Sbjct 31877568 GAC 31877566 >seq123 Length=4477440 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || || | ||| ||||| || |||||||| |||||||| | | |||||| | ||| Sbjct 3177132 AGCACTTTCTGCTTGAGCTGCGCCACCTGCTCCCGCAGCAGGCTCGCGGTGGACGCCAGC 3177073 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||| || ||||||||||| |||| |||||| || || Sbjct 3177072 TCGGTGTTCTGGCTCTTGAGCGTCTTGACCTTCTCCTCCAGGCGCGAGATGCGCTCGAGC 3177013 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 3177012 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 3176953 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || || ||||| ||||||||||| || ||| Sbjct 3176952 ATACGCTCCTGCGTGTCCATGTCGATGGGCGAC 3176920 >seq16 Length=31710007 Score = 111 bits (122), Expect = 3e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||||| |||||||||| ||||||||||| ||| || ||||||| || |||| || Sbjct 26961987 TCGTCCCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCTCTCTTCTTC 26962046 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || |||||||| | || |||||||| | |||||||| |||||||| || Sbjct 26962047 AGCCAGAAGATGGCCGCGAAGGCCCCCGAGAAGAACACACCCTCCACAGCCGCGAAGGC 26962105 >seq13 Length=33879094 Score = 100 bits (110), Expect = 5e-16 Identities = 91/112 (81%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 ||||| |||||||||||||||||| ||| || ||||||||||| ||||| ||| || Sbjct 19878322 ATCTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGTTGGTTGCTCTTC-CG 19878264 Query 213600 TTGGCAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 | |||| |||| |||||||||||||| |||| || |||||| ||||||| Sbjct 19878263 ATTGCAGGAATCTTTGTAGAGCATGTACGGGGTACCCGTCTCTGTCTGGGAC 19878212 >seq86 Length=9768497 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | ||| ||||| ||||||| ||| ||| |||||||||| |||| | ||| Sbjct 5480119 TCGTCTCTGCTAATGAGTTCGTTGGAAAAGGTGAGGCCAGGCATGAGTCCCCGTTTCTTG 5480060 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| |||| || ||||| ||||| ||||||||||| ||||| || || || || Sbjct 5480059 AGCCAGAAGATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACCGCGGCAAAGGC 5480001 >seq63 Length=14067986 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 241498 CTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGC 241557 ||||||||| ||||||||||| ||||| | ||||| || | | | ||| |||| ||| Sbjct 1108984 CTTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTCTTCCTGCACTTGGAGGC 1108925 Query 241558 TGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTC 241617 || | |||||||| | | ||| | || ||||||||||| |||||| ||||||||| Sbjct 1108924 GGCGATGCGGTTCCTCATGCGCTTCCTCTCGGCCTTGATGCGCTCCTGGGACTCCATGTC 1108865 Query 241618 GATCGGAGAC 241627 ||| || ||| Sbjct 1108864 GATGGGGGAC 1108855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931499742229760