Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq86 114 2e-20 seq16 105 1e-17 >seq86 Length=9768497 Score = 114 bits (126), Expect = 2e-20 Identities = 109/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| || ||||| |||||||| || ||||| ||||| Sbjct 5479986 GGAGAGCGCGTGGTGGCCTTTGCCGCGGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 5480045 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 | ||||||||||||||| | | |||||| |||||| || || |||||||||||| || Sbjct 5480046 TCAATCTTCTGGCTCAAG-AAACGGGGACTCATGCCTGGCCTCACCTTTTCCAACGAACT 5480104 Query 25992 CATCAGCAGGGACGAGG 26008 ||| ||||| ||||||| Sbjct 5480105 CATTAGCAGAGACGAGG 5480121 >seq16 Length=31710007 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| || ||||||||||| | || ||| || | || ||||||||||||| Sbjct 26962110 TGGTGGCCTTCGCGGCTGTGGAGGGTGTGTTCTTCTCGGGGGCCTTCGCGGCCATCTTCT 26962051 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || |||||| || || ||| |||||||||||||||||||||| Sbjct 26962050 GGCTGAAGAAGAGAGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCAGCAGGG 26961991 Query 26003 ACGAGG 26008 |||||| Sbjct 26961990 ACGAGG 26961985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928811837620160