Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq26 159 4e-34 >seq26 Length=25788011 Score = 159 bits (176), Expect = 4e-34 Identities = 198/271 (73%), Gaps = 10/271 (4%) Strand=Plus/Plus Query 153745 CCCGCGTCCCTCAGATGCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAA 153804 || || ||| | ||||| || || ||||| | || || | ||||||| || ||||| Sbjct 12686197 CCTGCATCCTTAAGATGTTCTCTGCAAACTTCCCAGCAAGCCGTAATTGTGACATGGCAG 12686256 Query 153805 AAGAAGAAAGCTGTAGGTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTG 153864 || ||||| |||||| | |||||||| |||| ||| || || || ||||||| | ||| Sbjct 12686257 AAAAAGAAGGCTGTAAGCCCAGAAAACATGGTCACCTACAGTAAGACCCACGGGATTGTG 12686316 Query 153865 CTTCAGCCCACATATAAAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGT 153924 | |||||| | |||| || || | || || |||||| |||| ||| ||| ||| Sbjct 12686317 GTCCAGCCCGCCTATAGGGACAGGGTGAACATCACCGAACTAGGACTT-----CAGAAGT 12686371 Query 153925 -----ATAACGTTTTGGAATGCAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTA 153979 || || || ||||||||||||||||| |||||||| ||||| |||||||| || | Sbjct 12686372 CAGCCATCACTTTCTGGAATGCAACACTGGAAGATGAAGGGTGTTACATGTGTCTCTTCA 12686431 Query 153980 ATATGTTCGGTTCTGGTAAGGTATCGGGAAC 154010 ||| || || ||||| ||| | || ||||| Sbjct 12686432 ATACTTTTGGCTCTGGAAAGATCTCAGGAAC 12686462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649276157994640