Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq111 311 1e-79 seq26 127 2e-24 seq10 114 1e-20 seq49 107 2e-18 >seq111 Length=6053440 Score = 311 bits (344), Expect = 1e-79 Identities = 669/991 (68%), Gaps = 23/991 (2%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||||||| |||| ||| || | ||| || || ||| || ||||| || Sbjct 2827728 CAGATGCTCATCCAGACACTGGATGGCAAAGAGGTCCACATCCATGTCAAACTTATTGGC 2827787 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || | ||||| || | || |||||| || ||| |||| || || | ||| || Sbjct 2827788 AAAAAAGTGGTGT---TTGCGCAGCATCCAGGTCAAGTCACCGGCTCCAAAAATGCACAC 2827844 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 | || | ||| || |||| ||| || || || |||| || || ||||||||||| Sbjct 2827845 GCTGCGCACGTGGACACCGTCGCAGGGTGGATAGGGAGCGCCCTTGTTAACGTCACCTTC 2827904 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | ||||||||||||| ||||||||||| | ||||||||||| || |||||| |||| Sbjct 2827905 GAAGTACTGCCACTTGACAAACCTGGCAACAGCCTGCATGTCAGACAGGTCGTACTTGTG 2827964 Query 160292 CATCAGGGGAACGGCACC-GGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 |||| || | | ||| ||| | ||||| | | ||| | |||||||| || | | Sbjct 2827965 GCTCAGCGGTAGAGAACCTGGGGCCTCCGGG-ACCCTCTGGATCGTGGCCCAGAGATACT 2828023 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT-TAACCTGTCCCGC 160409 | || |||||||| ||||||| | ||| |||||||||| | ||| | | | | | Sbjct 2828024 CATCAGGGCTGTATGTGTCCTGCGCCCACTCCATGAACTTTTGGATGTCTTCATTTTC-C 2828082 Query 160410 AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG- 160468 || |||| || || ||| | || ||||| || || || || ||||| | || Sbjct 2828083 AGCACGTAGCCCACATACTCCCTGCTGACCACAAAATAGGCACTCCCTGAGAAAAGAGGC 2828142 Query 160469 --TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACC 160526 | || || |||| |||| |||| | || |||| | || | ||| | | Sbjct 2828143 GTTTTGAGTGGAGGCTGCGT---TTTGGCGGTGCCTGTGTCTGTCAGCTTTCCATCGATG 2828199 Query 160527 AGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGA 160586 | |||| || | |||||||| | || || | |||||| || || || || Sbjct 2828200 ACTGCGTAATGCCTTTTCCACCTTTCTGCTTTATGGGATGGCATCTTCTCTGTTTCCAGG 2828259 Query 160587 CTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGA 160646 |||| |||| || || || |||| | |||| || || ||||| || || | ||| Sbjct 2828260 TTGTTTTCACCCATGAAGGACTTGAGCTTCCTGACCATTTCCAGGTTGGTTTTAATAGGA 2828319 Query 160647 AAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCC 160706 || || | || || | ||| |||| ||||||||| | || |||| || |||||| Sbjct 2828320 AAATCCATCCCACAAAGGTTGATCAAGTACTTCCAGTCTGCACTCATTCTGTAGAGGTCC 2828379 Query 160707 CTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGT 160766 ||||||| || | || |||||||| || ||||| || ||||| || ||| |||| | Sbjct 2828380 TTCATGCAGTTGAGGTCAGCCTGCACCCGACTCCACGACGCGTAGACCACGCTCTCCAAC 2828439 Query 160767 TTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAG 160823 | ||||||||||||||| || |||||| ||| |||| || ||| | || | |||| Sbjct 2828440 TGACTGGCCACAAAGACATTCCTGAAACAGGACGCGATGCCTTTCACTGCAGCTACAAAG 2828499 Query 160824 AA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881 | | ||| || ||| |||||| || | |||||| | ||||||||| || | Sbjct 2828500 GAGTCCTCTGAT-----TTTTTGTCCACATGGATGCAATAGAAATTCTGAGGCATATAAA 2828554 Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941 ||||||| || | ||| || | ||| || || || ||||| | ||| || || || || | Sbjct 2828555 TGGCCCTTAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATGGAATATGCAA 2828614 Query 160942 TCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAA 161001 |||| || | | ||||| ||| |||| | | || || ||| ||||||| | Sbjct 2828615 TCGGGAAGCCTGCTTCCTCTTTACTAAGGGGTTCTACGATATATTTACGCATCTTGATGA 2828674 Query 161002 AATAATCACAATCCCGCGTCATGTTGATATA 161032 || | ||| |||| |||||||||||||| Sbjct 2828675 AAGAGGTACAGTCCCTGGTCATGTTGATATA 2828705 >seq26 Length=25788011 Score = 127 bits (140), Expect = 2e-24 Identities = 219/317 (69%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||||| || || || || || |||||||| ||| Sbjct 12686480 TAGAGGGTAAGGCAGGCTGTTCCTGAGATCTTTCCAGAGCCAAAAGTATTGAAGAGACAC 12686421 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || ||||| || |||| || | |||||| || || | | ||| || | || Sbjct 12686420 ATGTAACACCCTTCATCTTCCAGTGTTGCATTCCAGAAAGTGATGGCTGACTTCTGAAGT 12686361 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 || | | || |||||||| | || |||| | || || || |||| |||||| || Sbjct 12686360 CCTAGTTCGGTGATGTTCACCCTGTCCCTATAGGCGGGCTGGACCACAATCCCGTGGGTC 12686301 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | ||| ||||| ||||||| || ||||| ||||| | |||||||| || || || Sbjct 12686300 TTACTGTAGGTGACCATGTTTTCTGGGCTTACAGCCTTCTTTTTCTGCCATGTCACAATT 12686241 Query 168390 AGAACCTCTTTATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGT 168446 | | ||| | || | ||||| |||||||| | || || || ||||||||||| Sbjct 12686240 A---CGGCTTGCTGGGAAGTTTGCAGAGAACATCTTAAGGATGCAGGTGTGTTCAGCAGA 12686184 Query 168447 TCTCGCTCATCTTGAGT 168463 | || ||||| || || Sbjct 12686183 TGTCTTTCATCCTGGGT 12686167 >seq10 Length=36757452 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 176235 TATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGA 176294 || ||| |||| |||| || |||| |||||| | |||||||| |||| | || |||| Sbjct 22315187 TACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGTATGAATGAATCTGCTGGA 22315128 Query 176295 ATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAAT 176354 || || || ||||| |||| ||||| ||||| | ||| | ||||| | | || || Sbjct 22315127 ATATAATTCTCATAGTTTTCCCTGGATGGTCCCAGAACAACAGGTACAGATCCAGCCAAG 22315068 Query 176355 AATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAA 176414 || | |||| |||||||| ||||| || |||| |||||||||||||||| | | Sbjct 22315067 AAAGCATTATAGAGCTTTTCTGTTATGTAATCTTTGTGGATTGAGTTTTCAAAAGAGAGA 22315008 Query 176415 TAGAACTTACA 176425 ||||| ||||| Sbjct 22315007 TAGAATTTACA 22314997 >seq49 Length=17942781 Score = 107 bits (118), Expect = 2e-18 Identities = 203/293 (69%), Gaps = 13/293 (4%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || | |||||| || |||||| || |||||||||| ||| || | Sbjct 15204993 GTCAAACTTGTTGGCCAGCAGATGATG---GTTCTGCAGCATCCAGTGCAGGTCCCCAGC 15205049 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | || |||| || || ||| | ||| |||| | ||| |||| || Sbjct 15205050 CCCATAAACACAGATGGCGCGCTGGTGGATTCCGGAGCAACGTCCGTAAGGAGCCCCC-- 15205107 Query 160217 CGCC--ACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCG 160274 || | ||||| || |||| | ||||||||| || | |||||| || | |||||| Sbjct 15205108 CGGCTGACGTCTCCCTCGTGTTCCTGCCACTTGACCAGCCTGGCGATGGAGGTCATGTCC 15205167 Query 160275 GAGGTGTCGTATTTG---TACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGT 160331 ||| ||||||| ||| | || ||| ||| || |||| | | || |||||| Sbjct 15205168 GAGATGTCGTACTTGGGGTGCAA-AGGAGAAGAGC--CGGGCATCCAGGAGGCACGCTGC 15205224 Query 160332 AGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 ||||||||||| ||||| |||||||| ||||| ||||| || | ||| || || Sbjct 15205225 AGGGTGGCCCAGAGGTGCTCGTCGGGACTGTAGGTGTCTTTGGCCCACTCAAT 15205277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577198715933640