Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq115 113 4e-20 seq15 105 6e-18 seq118 84.2 2e-11 >seq115 Length=5499404 Score = 113 bits (124), Expect = 4e-20 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||| ||||| ||| | ||||| || || | || || || |||||| | ||| || Sbjct 2584699 GATCCAGATTTTTGTAAAAACCCTTACTGAGAAGACCATCACGCTCAAGACTGAACCCTT 2584640 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| ||||| |||||| |||||||| || || || ||||| ||||| ||||| Sbjct 2584639 GGACACAACAGAAAATGTAAAAACCAAGATCCA-GATAAGGAGGGAATTCCTCCTGATCA 2584581 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATA 24881 ||| || |||||||||| || || || ||| | ||| || | || | ||| ||||| | Sbjct 2584580 GCAAAGTCTGATCTTTGCTGGTAAGCACCTGAAAGATG-GACATACTTTGTCTGATTACA 2584522 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||||| || || || || |||||| || Sbjct 2584521 ACATTCAAAAGGAGTCCACCCTTCATCCTGTGTTGAGA 2584484 >seq15 Length=31830809 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 || ||| || ||| | ||||| || | || || || || | |||||| || ||| || | Sbjct 647331 GACGCACATTTTTGTAAAAACCCTCTCGGGGAAGACCATCATGCTCGAGGTTGAACCCTC 647272 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| || ||| ||||| |||||||| || || ||||| || ||||| ||||| Sbjct 647271 AGACACTATAAAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 647212 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||| || || || || ||||| || | | |||| ||||| || Sbjct 647211 GCAAAGGCTGATCTTCGCTGGTAAGCAACTGGAAAATGGATGTACTTTGTCTGATTACAA 647152 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || || || | ||||| || | || || || Sbjct 647151 CATTCAAAAGGAGTCCACTCTTCATCTTCTGTTGAGACTCCGTGGTGG 647104 >seq118 Length=4884071 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| || || || || || || || || || || ||||| || || | Sbjct 2270369 ACAATGCAGATCTTCATGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGATC 2270310 Query 24761 ACCGACAC--AGTA--GAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCC 24816 | ||||| | | || | || || |||||||||||||| || || || || || Sbjct 2270309 AGTGACACCCACCACTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCC 2270250 Query 24817 CGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGA 24876 || || || | ||||||||||| | || |||||||| ||| | | | | |||| || Sbjct 2270249 AGACCAGCAGAGGCTGATCTTTGCCAGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGA 2270190 Query 24877 TTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| || |||| || || ||| |||| |||| || | ||||| Sbjct 2270189 CTACAACATCCAGAAGGTGAACACCCTGCACCTGGTCCTGCGCCTGAGGGGAGG 2270136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449881634258920